Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19h22
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 29 2.2
03_05_0092 - 20714102-20717902 28 3.9
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 5.2
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 5.2
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 9.0
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 27 9.0
05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818 27 9.0
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 27 9.0
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 9.0
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 9.0
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 27 9.0
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 27 9.0
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 9.0
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 27 9.0
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 27 9.0
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 368 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 502
+ I+ N Y+ +W T+ QP S W L K + A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -3
Query: 475 FHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFF 296
F + PL + L++ T N+ ++N L L H + D+H+++ I ++FF
Sbjct: 571 FFMVTESSGDVPLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFF 626
Query: 295 QEIYNSN 275
+ NS+
Sbjct: 627 ADFSNSD 633
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 146 QKSNMVNMPEQQSSTETAAVCKNEKLLNKL--ESSSYNKSNMDQLIAIVNFLEKKNINYI 319
Q+ N+ E A + E L ++ ESS K+ MD LIA+ E + +Y+
Sbjct: 1301 QEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEK-SYL 1359
Query: 320 LNVMPVMQDERKMSKRKKKV 379
V + ER +++++ ++
Sbjct: 1360 QEVNQRKETERTLARQRLEI 1379
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 810 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNV 852
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 673 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 715
>05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818
Length = 839
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 707 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 749
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 709 KSAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 751
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 719 KTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNV 761
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 567 KTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNV 609
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 921 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 963
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +3
Query: 63 LHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAKMKSC*INWNR 242
L HK R LG E K K +K+ W S + RP K+C N++
Sbjct: 508 LLHKEAGRRLGCGPGGSNEIKN--HKWFKSVNWKKLDSRQIQPSFRPNVAGKTCIANFDE 565
Query: 243 ALTTNPTWTS 272
T+ P S
Sbjct: 566 CWTSMPVLDS 575
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 938 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 980
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 55 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 930 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 972
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 143 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYIL 322
L SN+ N + AV +L NKLE + SN+ + A+ N K Y
Sbjct: 768 LANSNLQNELAMVQEQKNEAVASTVELGNKLEEQNQQISNLQE--AVENLEAAKTDMY-- 823
Query: 323 NVMPVMQDER 352
N + V Q+E+
Sbjct: 824 NELTVCQEEK 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,872
Number of Sequences: 37544
Number of extensions: 286328
Number of successful extensions: 712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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