Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h21
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.5  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   5.9  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   5.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = +1

Query: 505 HHMGHHALSQ--SHHR 546
           HHMGHH   Q   HH+
Sbjct: 165 HHMGHHMQEQHPQHHQ 180


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = +1

Query: 505 HHMGHHALSQ--SHHR 546
           HHMGHH   Q   HH+
Sbjct: 167 HHMGHHMQEQHPQHHQ 182


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 502 YHHMGHHALSQSH 540
           +HH GHH  +Q H
Sbjct: 323 HHHAGHHIHAQHH 335


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 383 RSTAAPRIFECLCISSNTQNGISKLLAKTTIW*GAP 276
           RS   P+I E    +  +Q+ I+++ A  T+W   P
Sbjct: 278 RSDEGPQITELEPETIESQDAITRIYAIATMWHETP 313


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLII 544
           I F+ K  ++     Q + F Y F ++W  + F   ++
Sbjct: 278 IPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFVSVL 315


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLII 544
           I F+ K  ++     Q + F Y F ++W  + F   ++
Sbjct: 278 IPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFVSVL 315


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLII 544
           I F+ K  ++     Q + F Y F ++W  + F   ++
Sbjct: 278 IPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFVSVL 315


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLII 544
           I F+ K  ++     Q + F Y F ++W  + F   ++
Sbjct: 278 IPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFVSVL 315


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 567 SRVYTISSMMRLRKCMVSHM 508
           +R +TI   ++ RKC VS++
Sbjct: 5   ARTFTIKCPVKKRKCTVSNV 24


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 409 HGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGH 519
           HG  T SH  Y QN+   + +   Q  YL+      H
Sbjct: 291 HGHNTSSHNYYAQNYAPTY-YGQMQPDYLNSQTTQNH 326


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 314 YLYHFACLMKYKDIQKYEVQQLIE 385
           +L   ACL  Y   Q+Y V Q I+
Sbjct: 6   FLLALACLKTYVSSQEYLVPQNID 29


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 314 YLYHFACLMKYKDIQKYEVQQLIE 385
           +L   ACL  Y   Q+Y V Q I+
Sbjct: 6   FLLALACLKTYVSSQEYLVPQNID 29


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 383 RSTAAPRIFECLCISSNTQNGISKLLAKTTIW*GAP 276
           RS   P+I E    +  +Q+ I+++ A  T+W   P
Sbjct: 511 RSDEGPQITELEPETIESQDAITRIYACGTMWHETP 546


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 383 RSTAAPRIFECLCISSNTQNGISKLLAKTTIW*GAP 276
           RS   P+I E    +  +Q+ I+++ A  T+W   P
Sbjct: 511 RSDEGPQITELEPETIESQDAITRIYACGTMWHETP 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,191
Number of Sequences: 336
Number of extensions: 3225
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)