Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h21
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.8  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.3  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.3  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   6.3  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.3  

>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 326 FACLMKYKDIQKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKSFT 493
           F  L +  DI  YE+   I+ AIN+S    L+    R+   D TT  E  L +  P+ F 
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626

Query: 494 YTFTTI 511
             F T+
Sbjct: 627 SLFKTL 632


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 335 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 478
           LM  K   +  VQ+++ +AIN S + DL+     +    T  N+R  Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 108  DADEPIIYFENITECLTDDQCDKFTYFAELK 16
            DAD  I+   NI   LT ++CD+F Y   +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 490 YLHVYHHMGHHALSQSHHRRYGVYARQKQSRFC 588
           ++H+YH+   H  + S    Y   AR   S FC
Sbjct: 34  HMHLYHYEHIHLFTSSQSYMYHPNARFSYSPFC 66


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 316 VSCLRRQQFGKVRRFRSSQKVYETKRIQQIAVFVTRKKRRQRYHGD*Q 173
           +SC ++Q +   + FR    +      Q++    +R KR+  Y+ D Q
Sbjct: 288 ISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNKRKHYYNNDWQ 335


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 221 DSYLLYSFRLIDLLRASKSAHLTKLLSS--QATYLYHFACLMKYKDIQK 361
           +S+  +SF  +  L    S H+ K LSS   A  + H  CL  +  + K
Sbjct: 28  NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSK 76


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +2

Query: 323 HFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTF 502
           + AC   Y D +K E + +I W      +  +  FR +   + +  ++R+ + K  +  F
Sbjct: 323 NIACEPMYIDYRKDETEAIIRWKTPLHAETCINAFRTQERKQNSHDDIRAHRKKGSSRPF 382


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 415 LATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSH 540
           L T SH I   +H+     +  +E+Y H Y +  HH  S SH
Sbjct: 338 LTTGSHAI---SHKEARTLLSVKEYY-HYYRNAYHHIDSISH 375


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/24 (33%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 482  KSFTYTFTTIWDTMH-FLSLIIDD 550
            KS++++F  IW T H  L++++++
Sbjct: 3737 KSYSFSFNFIWSTFHQMLNVVLEN 3760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,907
Number of Sequences: 5004
Number of extensions: 51488
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)