Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h21
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    38   0.006
02_05_0633 - 30492742-30492987,30493082-30494194                       29   2.1  
12_02_0868 - 23839077-23839382,23839626-23839935,23840003-238401...    28   4.9  

>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 403 PRHGLATVSHRIYGQNHRTQ---FAFVPAQEFYLHVYHHMGHH--ALSQSHHR 546
           P +        IYG +  TQ    A V AQE+Y H +HH+ HH  A +  HHR
Sbjct: 349 PEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHR 401


>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 218 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 126
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>12_02_0868 -
           23839077-23839382,23839626-23839935,23840003-23840128,
           23840202-23840436,23840649-23840684,23841033-23841162,
           23841318-23841410,23841556-23841678,23841769-23841835,
           23841937-23842028,23842136-23842291
          Length = 557

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = -1

Query: 538 ETEKVHGVPYGGKRVSKTLGLARTQIEFCGFVHKFYAKLLQVHVGGCV-------NGPF 383
           E +   G P G   + + L   R  + F G VH  Y +   V+ G CV       NGPF
Sbjct: 414 EEQGTFGEPMGRDTIEELLQKYRVDLAFYGHVHS-YERTCPVYQGQCVVNASDHYNGPF 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,498
Number of Sequences: 37544
Number of extensions: 330358
Number of successful extensions: 1003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)