Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h21
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)                 29   2.8  
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                29   2.8  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_46958| Best HMM Match : DUF1349 (HMM E-Value=5.2)                   27   8.6  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   27   8.6  
SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   27   8.6  

>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -2

Query: 483 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 319
           LGWH RK  +             S S     AH   CC+  F  S  F+KH  W+
Sbjct: 75  LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 409 HGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRY 552
           H L    HR Y  +H         Q  + H +HH  HH   Q HH  +
Sbjct: 248 HKLKNPRHR-YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHH 294


>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +2

Query: 266 ASKSAHLTKLLSSQAT---YLYHFACLMKYKDIQKYEVQQLI 382
           ++KS +  KLL ++ +   YLYHF   +K K+ +++E +Q+I
Sbjct: 306 SAKSGYNVKLLFTKLSKDLYLYHFTRYLKMKEERRHEGEQII 347


>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 409 HGLATVSHRIYGQNHRTQ-FAFVPAQEFYLHVYHHMGHHALSQSHHRRYGV 558
           H L +VSH  +G  H +     V      L V H + +H+L    H R+GV
Sbjct: 221 HSLFSVSHIRFGITHPSPCHTLVSVSLTLLGVTHSIRYHSLFSVSHTRFGV 271


>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
          Length = 55

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 414 TCNS--FA*NLWTKPQNSICVRASP 482
           TC    F  ++W+ PQN+ICVR  P
Sbjct: 17  TCKKGLFKMSVWSNPQNNICVRECP 41


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 430 HRIYGQNHRTQFAFVPAQEF-YLHVYHHMGHHALSQSHHRRY 552
           H  +  NH   +AF     F Y    HH  H+A + +H   Y
Sbjct: 26  HYAFTSNHTFHYAFTSNHTFHYTFTSHHTFHYAFTSNHTFHY 67


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +1

Query: 430 HRIYGQNHRTQFAFVPAQEFYLHVYHHMGHHALSQSHHRRYGV 558
           H++    HR           + H +HH  HH   Q HH  + +
Sbjct: 36  HKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHHHHI 78


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 126  YVSADTDADEPIIYFENITECLTDDQCDKFTYFA 25
            YV+   D D  I YF N  E  + DQ  KF  FA
Sbjct: 3294 YVAGIKDTDLHIEYFWNALENFSQDQLRKFIKFA 3327


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 437  ILCETVASPCRGMR*WPIRSTAAPRIFECLCISSNTQNGISKLLA 303
            +L   +A P +  R W + S++   I+E  CIS  T     K+ A
Sbjct: 3149 LLTSLLADPEQASRGWHVSSSSVQLIYELGCISDGTAPKRMKIFA 3193


>SB_46958| Best HMM Match : DUF1349 (HMM E-Value=5.2)
          Length = 248

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 383 EWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSF 490
           E+ IN  PD D+  F+IE   K     + + Q K+F
Sbjct: 124 EYTINTFPDCDIVSFKIEVSLKKRFYGMYNTQGKAF 159


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 383 EWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSF 490
           E+ IN  PD D+  F+IE   K     + + Q K+F
Sbjct: 479 EYTINTFPDCDIVSFKIEVSLKKRFYGMYNTQGKAF 514


>SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 156 LCQAPATASL-YVSADTDADEPIIYFENIT---ECLTDDQCDKFTYFAELKQE 10
           +C  P T +    S+  DAD P IY  NIT     +  D  D    F++ K E
Sbjct: 44  ICGGPLTGNNGSFSSPEDADNPSIYMTNITCFWHLIIPDGSDAVISFSKFKTE 96


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 490 YLHVYHHMGHHALSQSHHRRYGVYARQKQSRFCH 591
           Y H +HH  HH     HH+R+    R +     H
Sbjct: 309 YHHHHHHRHHHHHHHHHHQRHRHRHRHRHRHHHH 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,164,776
Number of Sequences: 59808
Number of extensions: 404845
Number of successful extensions: 1384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)