Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h19
         (469 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       30   1.4  
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    28   5.5  
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    28   5.5  
AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p pro...    27   9.6  
AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA...    27   9.6  
AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB...    27   9.6  

>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 109  WLCE--QVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSR 252
            WL +  +++P +  S++   +IN  LND+I+ D IY+L+E   S  KL R
Sbjct: 1235 WLADPKELWPRQQ-SVEEPVLINTVLNDKID-DPIYELIERYSSIEKLIR 1282


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
           kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 187 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 354
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
           protein.
          Length = 2013

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 187 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 354
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


>AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p
           protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 395 ASSSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKSTC 255
           ASS  ++   +   SS+CV T SS +      TL + N + +K + C
Sbjct: 322 ASSVSMSSSASSLASSACVSTSSSASSLAAAPTLPVSNASLLKSTAC 368


>AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA,
           isoform A protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 395 ASSSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKSTC 255
           ASS  ++   +   SS+CV T SS +      TL + N + +K + C
Sbjct: 322 ASSVSMSSSASSLASSACVSTSSSASSLAAAPTLPVSNASLLKSTAC 368


>AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB,
           isoform B protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 395 ASSSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKSTC 255
           ASS  ++   +   SS+CV T SS +      TL + N + +K + C
Sbjct: 524 ASSVSMSSSASSLASSACVSTSSSASSLAAAPTLPVSNASLLKSTAC 570


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,524
Number of Sequences: 53049
Number of extensions: 283197
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)