Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h18
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   2.8  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z92789-3|CAB07220.1|  123|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z83245-9|CAB05832.1|  122|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z83245-5|CAB05830.1|  122|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82271-3|CAB05211.1|  123|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81495-1|CAB04061.1|  122|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73102-9|CAA97413.1|  123|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70750-5|CAA94740.1|  123|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X15633-2|CAA33642.1|  122|Caenorhabditis elegans histone protein...    27   8.6  
U64845-11|AAC48034.2|  108|Caenorhabditis elegans Histone protei...    27   8.6  
U64845-7|AAC48023.1|  123|Caenorhabditis elegans Histone protein...    27   8.6  
U64843-7|AAF98225.1|  123|Caenorhabditis elegans Histone protein...    27   8.6  
U64843-6|AAF98230.1|  123|Caenorhabditis elegans Histone protein...    27   8.6  
U58750-8|AAB00648.1|  123|Caenorhabditis elegans Histone protein...    27   8.6  
U40934-8|AAK84525.1|  122|Caenorhabditis elegans Histone protein...    27   8.6  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    27   8.6  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF047656-5|AAC05103.1|  122|Caenorhabditis elegans Histone prote...    27   8.6  
AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone prote...    27   8.6  
AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone prote...    27   8.6  

>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 245 VINMFLNDEIENDKIYKL 298
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 257 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 385
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 299 LVCRFCHFQFHRLKT 255
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


>Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical
           protein T10C6.11 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 62  KQVHPDTGVSSKAMSIMNSFVNDVFE 87


>Z92789-3|CAB07220.1|  123|Caenorhabditis elegans Hypothetical
           protein H02I12.6 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>Z83245-9|CAB05832.1|  122|Caenorhabditis elegans Hypothetical
           protein ZK131.9 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>Z83245-5|CAB05830.1|  122|Caenorhabditis elegans Hypothetical
           protein ZK131.5 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>Z82271-3|CAB05211.1|  123|Caenorhabditis elegans Hypothetical
           protein F54E12.4 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>Z81495-1|CAB04061.1|  122|Caenorhabditis elegans Hypothetical
           protein F08G2.1 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>Z73102-9|CAA97413.1|  123|Caenorhabditis elegans Hypothetical
           protein B0035.8 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>Z70750-5|CAA94740.1|  123|Caenorhabditis elegans Hypothetical
           protein C50F4.5 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>X15633-2|CAA33642.1|  122|Caenorhabditis elegans histone protein
           protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>U64845-11|AAC48034.2|  108|Caenorhabditis elegans Histone protein
           39 protein.
          Length = 108

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 29  KQVHPDTGVSSKAMSIMNSFVNDVFE 54


>U64845-7|AAC48023.1|  123|Caenorhabditis elegans Histone protein 8
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>U64843-7|AAF98225.1|  123|Caenorhabditis elegans Histone protein 20
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>U64843-6|AAF98230.1|  123|Caenorhabditis elegans Histone protein 22
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>U58750-8|AAB00648.1|  123|Caenorhabditis elegans Histone protein 62
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 44  KQVHPDTGVSSKAMSIMNSFVNDVFE 69


>U40934-8|AAK84525.1|  122|Caenorhabditis elegans Histone protein 29
           protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 206 VYPDKDFSLKLKRVINMFLNDEIENDKIYKLVE 304
           +YPD  F +K+K + +  L   +EN ++  ++E
Sbjct: 530 IYPDTSFDMKMKGMSDKDLEQMLENVQLTNILE 562


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -2

Query: 402 NLCNV-NVTLTLFNNACIKKST 340
           NL NV NV++++F+NA IKK+T
Sbjct: 370 NLINVENVSVSIFDNAGIKKAT 391


>AF047656-5|AAC05103.1|  122|Caenorhabditis elegans Histone protein
           34 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 43  KQVHPDTGVSSKAMSIMNSFVNDVFE 68


>AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone protein
           54 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 62  KQVHPDTGVSSKAMSIMNSFVNDVFE 87


>AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone protein
           52 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   S K   ++N F+ND  E
Sbjct: 62  KQVHPDTGVSSKAMSIMNSFVNDVFE 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,909,600
Number of Sequences: 27780
Number of extensions: 196751
Number of successful extensions: 552
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)