Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h17
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   3.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 286 PSRRVDELCHMPEQCRXXXSVLLGALWSLPEI 191
           PS+ + E    PEQ +     ++G  +SLP +
Sbjct: 453 PSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMV 484


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 328 LVVQHLSVXRIHRGPSRRVDELCHMPEQCRXXXSVLLGAL 209
           L+VQ + V R H     +V ELC     C    S L G +
Sbjct: 146 LMVQAIQVLRFHLLELEKVHELC--DNFCHRYISCLKGKM 183


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 307 LKDAVPPTDYFXYQDHWRFMTQRYCY 384
           +KD+VP T  + +   W     + CY
Sbjct: 49  VKDSVPMTCRYTFLLEWYHTLSKACY 74


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 270 STLREGPRWIRXTERCCTTNRLLXVSGS 353
           + L   PR  R   R C  NRLL ++G+
Sbjct: 236 AALVTSPR-ARPLARTCRDNRLLVLAGT 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,618
Number of Sequences: 336
Number of extensions: 1419
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)