Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h17
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.6  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    24   8.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  

>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 313 DAVPPTDYFXYQDHWRFMTQRYCYLIALTIWLEKG 417
           DA+     F    H  F+T  Y Y I  T+ + KG
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKG 171


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 KNLDQXQELXETIRTICKEVDQXSREATTVLQVIHYXE 237
           ++LD+  E+   + T CK+VD+  ++   ++  I   E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 219 SNTLX*XRHCSGMWQSSSTLREGPRW 296
           SN     RH SG W S+    EG  W
Sbjct: 10  SNATGLQRHVSGRWISNVPSYEGNEW 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,802
Number of Sequences: 5004
Number of extensions: 23350
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)