Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h17
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...    58   3e-09
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    28   3.7  
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454...    28   3.7  

>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
 Frame = +1

Query: 94  LINKXFSDFQKNLDQXQELXETIRTICKEVDQXSREATTVLQVIHYXEXGIAPACGKARL 273
           +++  F  F+  LD+   L + IR +  EV+  SR A+  L ++H     +A   GKA+ 
Sbjct: 76  VMDAQFESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKA 134

Query: 274 LFEKAHDGYAXLKDAVP--PTDYFXYQDHWRFMTQRYCYLIALTIWLEKG 417
             E     Y+ L + +   P  Y+ Y   WR  TQ    ++A   WLE G
Sbjct: 135 QVEVIKGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETG 184


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 369 GHESPVILILEVICWWYS--IFQSCVSIVGLL 280
           G  S V  +LE+ CWW+S  ++   VS+V +L
Sbjct: 291 GSSSGVAALLEMDCWWWSRQLWLEGVSLVAVL 322


>01_01_0611 +
           4541505-4541646,4543503-4543621,4543728-4543866,
           4543924-4544178,4545094-4545212
          Length = 257

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 HYXEXGIAPACGKARLLFEKAHDGYAXLKDAVPPTDY 336
           HY     AP+ G ++ L     DGYA L++  PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,891
Number of Sequences: 37544
Number of extensions: 150833
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)