Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h17
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7)                    27   6.6  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)           27   6.6  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = -2

Query: 399 RERYQITVALGHESPVILILEVICWWYSIFQSCVSIVGLLEE*TSFATCRSNA 241
           +E+Y +T+  GH + VI+++ +I   +++  +   I+ ++     F T  S++
Sbjct: 229 QEQYPVTLLEGHSAEVIIMVFIIIRTFTVLITIFIIIAIIITCIIFTTITSSS 281


>SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7)
          Length = 405

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 73  VIMSDNELINKXFSDFQKNLDQXQELXETIRTICKEVDQXSREATTVLQ 219
           VI+SDNEL +  F  F K  +    L    RTI +     S  +  +L+
Sbjct: 82  VIISDNELRSHSFGSFFKEQNSDSLLPHKPRTISESGSHSSERSPRLLR 130


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 73  VIMSDNELINKXFSDFQKNLDQXQELXETIRTICKEVDQXSREATTVLQV 222
           +IMS+ + +++     Q++L + QE  ETI +  K++ Q ++     L V
Sbjct: 447 LIMSERDNVHRETDKIQEDLHKLQERNETISSENKQLYQLNKSLQDELNV 496


>SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)
          Length = 564

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +1

Query: 205 TTVLQVIHYXEXGI-APACGKARLLFEKAH--DGYAXLKDAVPPTDYFXYQDHWRFMTQR 375
           +T    IH    G   P C   RLLF       G+  L   V       Y D W F+   
Sbjct: 397 STATAFIHRKVYGAPTPPCPLRRLLFVSIMLMTGFLCLMSVVG-----VYLDKWSFLDSL 451

Query: 376 YCYLIALT 399
           YC+ I  T
Sbjct: 452 YCWFITFT 459


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 288 PRWIRXTERCCTTNRLLXVSGSLEIHDPTLLLSDSAHDMARE 413
           P W   +E    T  +  V GS++   P LLL  + H + RE
Sbjct: 416 PMWFSESEDSTVTEIVESVGGSVDATQPKLLLRQTQH-LVRE 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,952,100
Number of Sequences: 59808
Number of extensions: 170274
Number of successful extensions: 320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)