Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h10
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   5e-16
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.28 
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    28   3.5  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   4.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   4.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   4.6  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +3

Query: 69  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 227
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   ETRQLWCTCVNCIKLDITSQNG*TQRSCSCREST 109
           ETRQ  C C   ++   + Q    Q SCSC+ ST
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPST 55


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 158 ELDLHLSTLALRTSTAEYFHDTSKNVGFIHF 66
           ++D H+     R S +EYF +T +N+    F
Sbjct: 505 DVDFHIIRNLARASNSEYFEETCRNINNFEF 535


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8246 EPTGPEDQK---LSKNEKGEWVYP 8266



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9290 EPTGPEDQK---LSKNEKGEWVYP 9310


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 141  EYTGPENQYGRVLSRHEQERWVYP 70
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 141 QVKVEFIGETSRQIIRNVKGP-VRD 212
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,288
Number of Sequences: 27780
Number of extensions: 165165
Number of successful extensions: 394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)