Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19h09
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.14
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 0.25
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 0.77
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 0.77
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 1.0
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 1.0
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 1.3
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 1.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 24 2.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 3.1
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 24 3.1
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 23 4.1
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 4.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 4.1
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 23 4.1
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 23 5.4
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 23 5.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 23 5.4
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 23 7.2
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 23 7.2
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 7.2
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 23 7.2
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 23 7.2
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 23 7.2
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 22 9.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 22 9.5
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 22 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 22 9.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 22 9.5
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 0.14
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 175 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 68
CCN++ H + H +N TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 0.25
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 228 FFIIKFGIYLYTIFLVILVV 169
FF++ FG+Y +T+ L +LV+
Sbjct: 21 FFLVVFGLYSFTLILHLLVI 40
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 0.77
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 16 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 156
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 0.77
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 167 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 75
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 58 LDRNQLQNTDMEVLESLEYTSDNVE 132
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 95 CWKV*NTLVTTLNCYAKKY 151
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 100 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKN 192
+S+EY +N++ + K+ +VD N YY +
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYYNND 258
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 116 VYSKLSNTSMSVFCS 72
VYS L+NT++ FCS
Sbjct: 133 VYSSLANTTLEEFCS 147
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 19 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLCKKVCVI 159
A C D L L Q NTD +V ++L ++D+ +L+ K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 100 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKNCV 198
+SL D +E+ C+K + + NK YQ+ +
Sbjct: 272 KSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSI 304
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 134 NSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQS 36
NST S+ +SN++ S+ + TTTAK S
Sbjct: 84 NSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKAS 116
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 58 LDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNKY 180
+++ ++ EV +SL+Y+ CV+ D+ N Y
Sbjct: 1 MEKEDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTY 41
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 62 SNTTTAKQSPLQHIAPSI 9
SN + K SP++H++P++
Sbjct: 198 SNLPSNKSSPVKHVSPNV 215
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 88 MEVLESLEYTSDNVELLCKKVCVIVDNYNKY 180
+E+L+ + +VE ++ IVD+Y+KY
Sbjct: 490 LELLDKHQTALSSVENRLDEISEIVDSYHKY 520
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 63 PKSAAKHGHGSV 98
PKS A +GHGSV
Sbjct: 393 PKSQAAYGHGSV 404
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/37 (21%), Positives = 23/37 (62%)
Frame = +1
Query: 52 VVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIV 162
+VLD +L D++++ S+E ++ ++ +C+++
Sbjct: 928 MVLDGIELVEGDLQIIRSVEVKNEFLKSNTDGICIVL 964
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 48 RCGVGPKSAAKHGHGSVGKF 107
+CG+ P + AK +GSV +F
Sbjct: 93 KCGIRPVNRAKLTNGSVTEF 112
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 109 LNFPTLPCPCFAADFGPTPQRPNNRHCN 26
++FP+L DF + PNNR CN
Sbjct: 247 VHFPSLTT-AETLDFAAKCRTPNNRPCN 273
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 64 RNQLQNTDMEVLESLEY 114
RN+L N ++EVL +L +
Sbjct: 129 RNRLSNMELEVLRALNF 145
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 98 NTSMSVFCS*FRSNTTTAKQ 39
+TS SVF + RSN+ T K+
Sbjct: 379 DTSFSVFANLVRSNSPTLKE 398
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +2
Query: 35 AIVWPLWCWTEISCKTRTWK 94
A+ P+W W +T WK
Sbjct: 34 ALRCPIWLWPTYDAQTIPWK 53
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 228 FFIIKFGIYLYTIFLVILVVI 166
FFI F Y+Y I ++L I
Sbjct: 291 FFIAMFASYVYGILYLVLTTI 311
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 149 TFLHNNSTLSLVYSKLSNTS 90
TF+ +NST L Y LSN +
Sbjct: 528 TFIDSNSTEGLPYQILSNAT 547
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 133 LLCKKVCVIVDNYNKY 180
++CK+ + VD +NKY
Sbjct: 148 VVCKEAGITVDTHNKY 163
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 22.2 bits (45), Expect = 9.5
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = +2
Query: 44 WPLWCWTEI 70
W WCW E+
Sbjct: 223 WGAWCWPEL 231
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 232 FFFYNKIWYLFIH 194
F FY K YLF H
Sbjct: 214 FLFYEKFSYLFTH 226
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -1
Query: 196 HNFFGNTCCNYQ 161
H F CCNY+
Sbjct: 241 HRLFREACCNYE 252
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 152 HTFLHNNSTLSLVYSKLSNT 93
HT + L VYSKLS+T
Sbjct: 1152 HTNFNKVELLDFVYSKLSST 1171
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 22 MCCNGDCLAVVVLDRNQLQNT 84
MC G L+V QLQNT
Sbjct: 240 MCAGGSFLSVYTTPDMQLQNT 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,440
Number of Sequences: 5004
Number of extensions: 19873
Number of successful extensions: 77
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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