Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19h09
(232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 30 0.23
07_01_0117 + 894314-896677 28 1.2
12_02_0586 + 20831933-20832378,20832434-20833031,20833813-208339... 27 2.8
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 26 3.7
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 26 3.7
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 26 4.9
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 26 4.9
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300... 26 4.9
05_01_0520 - 4492182-4492780,4496886-4497951 25 6.5
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 25 6.5
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 25 8.6
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353 25 8.6
01_01_0418 - 3142659-3145622 25 8.6
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 115 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 14
C+++ T PCP + P+R N CNTS L
Sbjct: 23 CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLL 56
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 175 CCNYQLSH-ILFCITIQRCH*CILNFPTLPCPCF 77
CC + H +L+C+ C++ +PT+ CPC+
Sbjct: 469 CCYKPVFHFMLYCVR------CMMRWPTICCPCY 496
>12_02_0586 +
20831933-20832378,20832434-20833031,20833813-20833986,
20834208-20834570
Length = 526
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 19 AMCCNGDCLAVVVLD--RNQLQNTDMEVLESLE-YTSDNVELLCKKVCVI 159
A CC +CL++ + D RNQ N+ M + + E + + + L C ++ I
Sbjct: 391 AKCCKAECLSINISDQGRNQCVNS-MCICDQPEGWEKETISLECLRIVEI 439
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 209 VFIYTQFFW*YLL*LSTITHTFLHNNSTLSLVYSKLSNTSMSV 81
V+I T FF L ST++ + +S L + YS++ N ++ V
Sbjct: 274 VYITTSFFGYLLFGESTLSDVLANFDSNLGIPYSQMLNDAVRV 316
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 208 YLFIHNFFGNTC-CNYQLSHILFCI 137
Y + NF GNTC CN L + FCI
Sbjct: 22 YFGLENF-GNTCYCNSVLQALYFCI 45
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 15 RCDVLQWRLFGRCGVGPKSAAKHGHGSVGKF 107
R DV GRCG GP A G F
Sbjct: 61 RVDVASCGCLGRCGAGPNFGASVSGGGAAVF 91
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 208 YLFIHNFFGNTC-CNYQLSHILFCI 137
Y + NF GNTC CN L + FC+
Sbjct: 22 YFGLENF-GNTCYCNSVLQALYFCV 45
>02_03_0298 -
17428616-17428738,17428822-17428992,17429913-17430014,
17431654-17431764,17432142-17432228,17432551-17432588,
17432830-17432833,17433280-17433419,17434189-17434320,
17435289-17435354,17435966-17436013,17436055-17436160
Length = 375
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 7 VIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCVIVDNY-NKYY 183
+IE +GDC++ + N ME + SDN E + K+ + + NK
Sbjct: 205 LIEAGAVVSGDCISTAAKGGSNECNYSMEETGANRNISDNGEPVSKRKATELKSLGNKAV 264
Query: 184 QKNCV*INTKFYYK 225
+K T FY K
Sbjct: 265 EKKDYLSATGFYSK 278
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 7 VIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 123
V +G + + DCL V DR+ L + VLE +Y+SD
Sbjct: 259 VDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 91 EVLESLEYTSDNVELLCKKVCVIVDNYN 174
+V + +T++N +L C+ C +DN N
Sbjct: 124 DVNDMANWTNENTKLFCELYCKQIDNGN 151
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -1
Query: 178 TCCNYQLSHILFCITIQR-CH*CILNFPTLPCPCFAAD 68
TCC C R CH + CPCFAAD
Sbjct: 668 TCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQCPCFAAD 705
>02_05_0715 -
31168831-31169071,31169947-31170064,31170305-31170353
Length = 135
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 52 QRPNNRHCNTSHLQLH 5
+R N HC +SH Q+H
Sbjct: 31 KRLQNLHCESSHFQMH 46
>01_01_0418 - 3142659-3145622
Length = 987
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 143 LHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQ 39
LHN L + LS+ SM +CS F ++TT Q
Sbjct: 173 LHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQ 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,421,414
Number of Sequences: 37544
Number of extensions: 113406
Number of successful extensions: 344
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -