Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19h09
(232 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19934| Best HMM Match : Neur_chan_memb (HMM E-Value=2.7e-16) 27 3.2
SB_28532| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31) 26 5.5
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22) 26 5.5
SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07) 26 5.5
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32) 26 5.5
SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42) 26 5.5
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7) 25 7.3
SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33) 25 7.3
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2) 25 7.3
SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31) 25 7.3
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 25 9.6
SB_16194| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3) 25 9.6
SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14) 25 9.6
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
>SB_19934| Best HMM Match : Neur_chan_memb (HMM E-Value=2.7e-16)
Length = 314
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 178 TCCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAA 71
TCC + S I+F ++R + + LPC AA
Sbjct: 99 TCCAHPFSDIVFSFALERLPLYHVIYVVLPCVIIAA 134
>SB_28532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 11 LKVRCVAMAIVWPLWCWTEISCKTRTWKC 97
LK V + VW W EIS + ++KC
Sbjct: 149 LKWNSVRLCCVWTTRVWLEISVEKPSFKC 177
>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
Length = 354
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -2
Query: 210 GIYLYTIFLVILVVIINYHTY 148
GI++ T+FLV+LV ++ +T+
Sbjct: 176 GIFMMTVFLVMLVAMVFIYTW 196
>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
Length = 276
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 216 KFGIYLYTIFLVILVVIINYHTY 148
+ GI++ +FLVILV ++ +T+
Sbjct: 164 RMGIFMMAVFLVILVAMVFIYTW 186
>SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)
Length = 170
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 115 TSDNVELLCKKVCVIVDNYNKYYQKNC 195
T DN+ LL K VC I N+ Y+ C
Sbjct: 121 TFDNLCLLKKHVCHIKGNFTFYHHGGC 147
>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
Length = 354
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 216 KFGIYLYTIFLVILVVIINYHTY 148
+ GI++ +FLVILV ++ +T+
Sbjct: 174 RMGIFMMAVFLVILVAMVFIYTW 196
>SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)
Length = 315
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 26 VAMAIVWPLWCWTEISCKTRTWKCWKV*NTLVTTLNCYAKKYV 154
VA A VWPL W + ++ W + V+ ++ YA+ +
Sbjct: 263 VAHAAVWPLRAWANVKAAFGSFIGWFPVSQPVSGIHWYAESLI 305
>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
Length = 464
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 201 LYTIFLVILVVIINYHTYFFA*QFNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIA-T 25
L+T L + + I + H +V S+ T H H R L + V H +I I
Sbjct: 79 LFTRVLFLSITIAHAHRSLLITIVHVHRSLSITIVHVH-RSLSITIVHAHRSLSITIVHV 137
Query: 24 HRTFNYTV 1
HR+ + T+
Sbjct: 138 HRSLSITI 145
>SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)
Length = 312
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 26 VAMAIVWPLWCWTEISCKTRTWKCWK 103
VAMAI W W E+S T KC+K
Sbjct: 171 VAMAIEWGKQAWDEVSPDTIV-KCFK 195
>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
Length = 759
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 67 NQLQNTDMEVLESLEYTSDNVELLCKKV 150
N + TD + + TSDNV+L C+K+
Sbjct: 671 NDPETTDSLIKQIQTLTSDNVKLKCEKL 698
>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
Length = 626
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 26 VAMAIVWPLWCWTEISCKTRTWKCWK 103
VAMAI W W E+S T KC+K
Sbjct: 388 VAMAIEWGKQAWDEVSPDTIV-KCFK 412
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 103 FPTLPCPCFAA 71
F LPCPC+AA
Sbjct: 956 FSNLPCPCYAA 966
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 82 TDMEVLESLEYTSDNVELLCKKVCVIVDNYNK 177
T +E LESLE VEL K C D+ NK
Sbjct: 393 TSLESLESLESIESKVELHMKLSCQ-ADSLNK 423
>SB_16194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 49 VVVLDRNQLQNTDMEVLESLE 111
VVVL R QNTD+ L LE
Sbjct: 2 VVVLQRRDWQNTDITKLNGLE 22
>SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)
Length = 294
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 44 WPLWCWTEISCKTRTWK-CWK 103
WP+WC EI+ + + +K C K
Sbjct: 216 WPMWCGNEINNEHQCFKDCMK 236
>SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14)
Length = 440
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Frame = +2
Query: 53 WCWTE-----ISCKTRTWKCWK 103
W W E I+ K RTWK WK
Sbjct: 363 WWWDESVSSAINEKRRTWKAWK 384
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 127 RCH*CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQL 8
RC+ C + +L C + PT P R C + +++L
Sbjct: 404 RCNRCDFDSSSLNCGFVKGYYAPTLVTPTARTCASEYVEL 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,382
Number of Sequences: 59808
Number of extensions: 146483
Number of successful extensions: 453
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 54
effective length of database: 13,591,825
effective search space used: 299020150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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