Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h08
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   154   1e-38
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    36   0.005
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.95 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.7  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  154 bits (373), Expect = 1e-38
 Identities = 77/145 (53%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 369 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 545
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 546 EKKKAQLVVIAHDVDPIELVLFLPA 620
           E KKA+LV+IA DVDPIELV+FLPA
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPA 168


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           +R G N  TK + +  ++ +V+A D +PIE++L LP
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLP 67


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 224 YWSGHSANS*LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 379
           Y+  +  N  + Q+   A  YP+ +S    SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 404
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 531  LCLCRIGWC 505
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 485 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 315
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
 Frame = -1

Query: 404  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYS----LLTLDADILGPS-YKSGQVTSWL 240
            L+N ++ L  +L + L  +V++  H  TTL Y+    LL +  + +  S  K    T+++
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDKKEKNETAFM 1749

Query: 239  NALTNSKVLWPLLEER---IHNFL 177
            + +    +  P+L+     +H+FL
Sbjct: 1750 SMVLVLTLAAPILDSEQLVVHDFL 1773


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 375 TAKGLFKILEKYR 413
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,077
Number of Sequences: 5004
Number of extensions: 36193
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)