Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h08
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   158   4e-39
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   158   4e-39
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   133   1e-31
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151...    36   0.034
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744...    34   0.079
07_03_1414 - 26403361-26403969                                         28   6.9  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    28   6.9  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    27   9.1  
06_01_0820 + 6202348-6203313                                           27   9.1  
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033     27   9.1  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  158 bits (383), Expect = 4e-39
 Identities = 78/144 (54%), Positives = 96/144 (66%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 82  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           + KAQLVVIAHDVDPIELV++LPA
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPA 164


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  158 bits (383), Expect = 4e-39
 Identities = 78/144 (54%), Positives = 96/144 (66%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 66  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           + KAQLVVIAHDVDPIELV++LPA
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPA 148


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  133 bits (321), Expect = 1e-31
 Identities = 71/144 (49%), Positives = 92/144 (63%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLFEKRPK F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           K       ++L++ + E                          +P  ++ G + VT L+E
Sbjct: 83  KNLGCQKERLLKRAQAEA-----------------EGKTVEAKKPIVVKYGLDHVTYLIE 125

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           + KAQLVVIAHDVDPIELV++LPA
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPA 149


>10_01_0125 +
           1509642-1509759,1509847-1509950,1510693-1510824,
           1510936-1510962
          Length = 126

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           ++ G N  TK + +  A+ VV+A D +P+E++L LP
Sbjct: 33  LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLP 68


>03_02_0321 +
           7443835-7443837,7443957-7444077,7444168-7444271,
           7445056-7445187,7445285-7445311
          Length = 128

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           ++ G N  TK + +  ++ VV+A D +P+E++L LP
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLP 70


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 296 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 159
           L A +  P +  G++  + + +T  + L P LEE +    GL L+D
Sbjct: 77  LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 PHPASEGCTSASSESAPSDQP 349
           P PA E   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 473 QER*ASTKEAQHHPIRHKHSHQAGREEEGAACGHR 577
           QER A  +  + H  RH H H A +  +    GHR
Sbjct: 685 QER-ARRRHKRAHSHRHSHHHDAHKRHKTELAGHR 718


>06_01_0820 + 6202348-6203313
          Length = 321

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 339 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 226
           EG  S    V  SDAG GY +A    W  +   +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203


>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
          Length = 160

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 160 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 264
           S  L PR L +L    +RRG R L +VRA S  V  PD
Sbjct: 13  SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,889
Number of Sequences: 37544
Number of extensions: 260473
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)