Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h08
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   5e-43
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        73   2e-13
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        36   0.020
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          33   0.25 
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.3  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  171 bits (415), Expect = 5e-43
 Identities = 81/144 (56%), Positives = 99/144 (68%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
            KKAQLVVIAHDVDPIE+V++LPA
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPA 172


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 37/78 (47%), Positives = 45/78 (57%)
 Frame = +3

Query: 387 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 566
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 567 VVIAHDVDPIELVLFLPA 620
           VVIAHDVDPIE+V++LPA
Sbjct: 64  VVIAHDVDPIEIVVWLPA 81


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           +R G N  TK + +  A+ +V+A D +P+E++L LP
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLP 129


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           +  T+R G   V K + K +   V++A DV PI+++  +P
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIP 134


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 500 PLWWRLIFLGNLSFSSFPQPLFPG 429
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 311 TSASSESAPSDQPIYPDTG 367
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 258 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 407
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 254 LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQD 373
           +VQ+  + Q+     SE C   +S SA S+ P YP+ G+D
Sbjct: 46  VVQLTGVIQLTEWEFSEACHPYTSGSASSEDPQYPE-GRD 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,500
Number of Sequences: 59808
Number of extensions: 280064
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)