Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h08
         (620 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   203   2e-52
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   203   2e-52
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   203   2e-52
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   203   2e-52
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   203   2e-52
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    40   0.002
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    40   0.002
M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    33   0.41 
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    33   0.41 
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    33   0.41 
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    33   0.41 
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    33   0.41 
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    33   0.41 

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  203 bits (495), Expect = 2e-52
 Identities = 97/144 (67%), Positives = 111/144 (77%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           +KKAQLVVIAHDVDP+ELVLFLPA
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPA 177


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  203 bits (495), Expect = 2e-52
 Identities = 97/144 (67%), Positives = 111/144 (77%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           +KKAQLVVIAHDVDP+ELVLFLPA
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPA 177


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  203 bits (495), Expect = 2e-52
 Identities = 97/144 (67%), Positives = 111/144 (77%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           +KKAQLVVIAHDVDP+ELVLFLPA
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPA 177


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  203 bits (495), Expect = 2e-52
 Identities = 97/144 (67%), Positives = 111/144 (77%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           +KKAQLVVIAHDVDP+ELVLFLPA
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPA 177


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  203 bits (495), Expect = 2e-52
 Identities = 97/144 (67%), Positives = 111/144 (77%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 549 KKKAQLVVIAHDVDPIELVLFLPA 620
           +KKAQLVVIAHDVDP+ELVLFLPA
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPA 177


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 504 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           N +R G N  TK + +  A +VV+A D +PIE++L LP
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLP 69


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 504 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 617
           N +R G N  TK + +  A +VV+A D +PIE++L LP
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLP 69


>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 599
           RP+  ++ T+ VT L +K     +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,684,272
Number of Sequences: 53049
Number of extensions: 420809
Number of successful extensions: 2004
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)