Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h07
         (239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24762| Best HMM Match : Astacin (HMM E-Value=0)                     26   5.4  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  

>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 733

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 125 RQGNVRKNSELNKNDHQQKGLYXIIVFK 42
           RQ NV+ N+E+ + D+ +K ++ +I  K
Sbjct: 385 RQPNVKFNAEIMRKDNYEKEIHRLITAK 412


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 137 AQRRRQGNVRKNSELNKNDHQQK 69
           A+++R+G  +K  E+ KND +++
Sbjct: 805 AKKQRKGREKKGKEIKKNDDEEE 827


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,814,337
Number of Sequences: 59808
Number of extensions: 36947
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)