Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h07
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    25   5.4  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    25   5.4  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 149 QIXDAQRRRQGNVRKNSELNKNDHQQK 69
           QI  AQ+R  G + KN      DH +K
Sbjct: 218 QIDRAQKRSAGRIHKNYRRVATDHSEK 244


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 148  RFXTRKDEGKGMLEKIQNSIKTIINK 71
            RF   KD+    LEK++N++  ++N+
Sbjct: 8204 RFVKAKDDLYDYLEKLENNVSDVLNR 8229


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 115 MLEKIQNSIKTIINKRAY 62
           +L K+QN +K  +NKR++
Sbjct: 197 ILRKLQNDMKNAVNKRSF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,552
Number of Sequences: 27780
Number of extensions: 34588
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)