Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h07
         (239 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   6.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 128 RRQGNVRKNSELNKNDHQQ 72
           +R GN + +++ N+ND+ +
Sbjct: 514 KRNGNRQNDNQNNQNDNNR 532


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 173 DNILXXYXQIXDAQRRRQGNVRKNSELNKNDH 78
           DNI     Q  + Q+  + N       N+ND+
Sbjct: 421 DNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,782
Number of Sequences: 438
Number of extensions: 462
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)