Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    28   0.98 
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    28   0.98 
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   4.0  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   5.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.2  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   6.9  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   6.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   6.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   9.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   9.1  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   9.1  

>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 202 ESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDK 360
           E+ D DYN   PND+   +  +F      + + RS  ST   +DE K + ++K
Sbjct: 5   ENFDNDYNLPPPNDSAE-DLKIF-----IKRYERSVDSTLLEIDENKREALEK 51


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 202 ESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDK 360
           E+ D DYN   PND+   +  +F      + + RS  ST   +DE K + ++K
Sbjct: 5   ENFDNDYNLPPPNDSAE-DLKIF-----IKRYERSVDSTLLEIDENKREALEK 51


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 425 SEFSISLCQISRSPK*SGGVNFLSISCDF 339
           +EFS+SL   S+ PK S G++F  I  DF
Sbjct: 195 NEFSVSLTTNSQDPK-STGISFQWIVVDF 222


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 388 DLLIWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEG 513
           D  IWH           PW DAV   E S Y I +  +L+ G
Sbjct: 66  DYHIWHTAPSTGKTYLQPWNDAV---EPSTYYIDEGTFLRTG 104


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 127 LVATV*IQCLDRVLQSNFYI*SCVQLVAQVKA 32
           +V T  + CLDR   + F I  CV L AQ++A
Sbjct: 425 VVRTNCVDCLDRTNAAQFVIGKCV-LAAQLRA 455


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 30/123 (24%), Positives = 48/123 (39%)
 Frame = +1

Query: 157 GVDESNRVAEKPQVYESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDE 336
           G+DE++            DGDY +   N T SLE + F         N         L+ 
Sbjct: 300 GIDENDIYTLNQTGKTPEDGDYMKFLSNKT-SLEGARFGLPWKRLWQNAKADEIDRLLEV 358

Query: 337 VKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEGK 516
           VK  E          + +   ++ D++++D     W   + +   SEY + KVD+    K
Sbjct: 359 VKQIEEAGAIV----YNNTNFYNLDVISNDG----WNWELGSVNESEYTVVKVDFYNNIK 410

Query: 517 DYL 525
            YL
Sbjct: 411 SYL 413


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 160 VDESNRVAEKPQVYESIDGDYNENRPN 240
           + ESN ++ +P  +     DY  N PN
Sbjct: 440 IGESNSLSNQPNNFAQTSFDYQPNHPN 466


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +1

Query: 157 GVDESNRVAEKPQVYESID----GDYNENRPNDTLSLEY--SLFRFKNAARDFNRSQKST 318
           G   S  + +KP+VYE +D      Y  ++P++T+  E   ++   K  A     S   T
Sbjct: 246 GFYHSLHIEKKPEVYEYLDKVAAWIYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPT 305

Query: 319 PFPLDEVKSQEMDKKFTPP 375
             P++E +S +      PP
Sbjct: 306 GVPVEE-ESHKATSDAVPP 323


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 211 DGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQ-EMDKKFTPPDYFG 387
           D D+N +  ND  ++E         A+D    +KS    +DE  ++     K   PD+F 
Sbjct: 605 DDDWNSDSDNDENNVEIVTAEAMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFL 664

Query: 388 D 390
           D
Sbjct: 665 D 665


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 289 RDFNRSQKSTPFPLDEVKSQEMDKKFTP 372
           R +N +    PF LD +    MD  F P
Sbjct: 98  RVYNDADTMDPFSLDTIPDSSMDMPFDP 125


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 334 EVKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKDAVFNFE 468
           E++ + +D K     YFG LL+W  D++N  +     +  V+ FE
Sbjct: 414 ELEQRVIDWKGYSLQYFGQLLVW--DVVNVCKADIEREYHVYLFE 456


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 130 KIPLAVIDKGVDESNRVAEKPQVYESIDGDYN-ENRPNDTLS 252
           ++P   +    +E+     KPQ Y  ++ DYN  N P   +S
Sbjct: 450 QLPKPPVQAWQNENLSSNNKPQEYVGVENDYNFSNNPPTAMS 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,208
Number of Sequences: 5004
Number of extensions: 42503
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)