Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    31   0.75 
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    29   1.7  
12_01_0272 + 1985348-1986036,1986142-1988020                           29   2.3  
11_01_0271 + 2039100-2041760                                           28   4.0  
11_06_0504 + 24376580-24377017                                         28   5.3  
04_03_0997 - 21548158-21548377,21548482-21548523,21548646-215487...    27   7.0  
10_08_0530 + 18568034-18568160,18568716-18569011,18569380-185694...    27   9.2  

>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 241 DTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKFTPPDYFGDLLIWHNDILN 420
           D+  L+ S +   N      R Q+  P+ L +   + ++ K  PPDY+        + L 
Sbjct: 25  DSSRLDGSPYSANNYPLSSRRQQQLAPYKL-KCDKEPLNNKLGPPDYYPQTPNCPEETLT 83

Query: 421 SDEVPTPWKDAVFNFEHS-EYKIPKVDY 501
            + V + +K+ V   E + E  + ++ Y
Sbjct: 84  KEYVQSGYKETVEGIEEAREIVLSQIPY 111


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 100 DIVFKQSQLDKIPLAVIDKGVDESNRVAEKPQVYESIDGDYNENR 234
           D++  Q     IP+ V+D   DE  +  EK +V + +  + N+ R
Sbjct: 365 DLLESQDSTKNIPIIVLDDDSDERGKEQEKSEVLDQLIQEKNKGR 409


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -1

Query: 255 QTQRVVGTVLVVISVDRFVNLWFFCNSIRFVYTLV 151
           QT+ +VG  +++ +  R   ++F+CN+  F+ +LV
Sbjct: 727 QTEHIVGDPVLLTNYARRYKVFFYCNATSFMASLV 761


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 255 QTQRVVGTVLVVISVDRFVNLWFFCNSIRFVYTLV 151
           QT+ +VG  +++ +  R    +F+CN+  F+ +LV
Sbjct: 758 QTEHIVGDPVLLTNYARRYKAFFYCNATSFMASLV 792


>11_06_0504 + 24376580-24377017
          Length = 145

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 85  AVPDRDIVFKQSQLDKIPLAVIDKGVDESNRVAEKPQVYESIDGDYNENR 234
           ++P    V  +  LD++P  V+D  ++  N   E+   +E +  D +E R
Sbjct: 34  SLPKLSEVLSKDILDRVPPEVLDSLIEFENTRGERKARWEKLRDDLHEER 83


>04_03_0997 -
           21548158-21548377,21548482-21548523,21548646-21548722,
           21548798-21548914,21549149-21549252,21549330-21549399,
           21549489-21549598,21549845-21549932,21550006-21550096,
           21550176-21550268,21550362-21550687,21550922-21551290,
           21551934-21552020
          Length = 597

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 271 RFKNAARDFNRSQKSTPFPLDEVKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKD 450
           RF   AR         P   D V++     K    DY  DL++W + ++N    P   KD
Sbjct: 517 RFSEWARSGTERVGRRPGQPDVVETLYHADKAKTEDYILDLVVWLHHLVNQSNRPANAKD 576


>10_08_0530 +
           18568034-18568160,18568716-18569011,18569380-18569475,
           18570107-18570166,18570711-18570956
          Length = 274

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 148 IDKGVDESNRVAEKPQVYESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFP 327
           +D+ +DE++R     + YE  D DY   RP+ T     S +  K+       + K+ P P
Sbjct: 102 LDEKLDEASRTFHVTEEYEDDDYDY---RPDVTFR-RGSTYNVKDLDLTRPAAAKNPPRP 157

Query: 328 LDEVKSQEMDKK 363
             +  ++E+ KK
Sbjct: 158 QFQTTTEEVLKK 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,995
Number of Sequences: 37544
Number of extensions: 256483
Number of successful extensions: 723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)