Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)                   28   4.1  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   4.1  
SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)                    28   4.1  
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     28   4.1  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     28   5.4  
SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)                    27   7.2  
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)                     27   7.2  

>SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)
          Length = 926

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 394 LIWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEGKD 519
           ++W++DIL + E+P+P  D  +  E  E+ +P +  LK   D
Sbjct: 639 MVWNSDILANPELPSP-SDYGWKLEADEW-VPVMTSLKPAPD 678


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 205  SIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQ 309
            S D   N N  N +L+ +YS+  F ++ ++F+ SQ
Sbjct: 916  SADNVKNRNPNNPSLNADYSIMAFADSIKNFDTSQ 950


>SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)
          Length = 796

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 397 IWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEGKDY 522
           IW N  L++ E P  WK A  N       +PK+D  KE KDY
Sbjct: 704 IW-NLSLSTQEWPLSWKRANIN------PLPKMDIPKEDKDY 738


>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 397 IWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEGKDY 522
           IW N  L++ E P  WK A  N       +PK+D  KE KDY
Sbjct: 411 IW-NLSLSTQEWPLSWKRANIN------PLPKMDIPKEDKDY 445


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 394  LIWHNDILNSDEVPTPWKDAVFNFEHSEYKIPKVDYLKEGKD 519
            ++W++DIL + E+P+P  D  +  E  E+ +P +  LK   D
Sbjct: 1255 MVWNSDILANPELPSP-SDYGWKLEADEW-VPVMTSLKPAPD 1294


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 114 TVATRQDSSSSNRQGCRRI*SSCRKTTSLRIDRRRLQREP 233
           ++++RQ S+ S  +  R+I +SC    +  +DRRR    P
Sbjct: 15  SMSSRQTSTESLEENIRKILTSCEDDDNEFLDRRRSTSSP 54


>SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 194 CGFSATRLDSSTPLSITARGILSSCDCLNTMSRSGTAIKFLHLIVC 57
           C F  T LD+S  L I A   L SC  L   +       FL +I C
Sbjct: 120 CSFLQTHLDASNCLGIRAFADLYSCTELENAAFKYICQHFLDVIKC 165


>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 LEYSLFRFKNAARDFNRSQKSTPFP 327
           L +S FRFK + ++  R  +  PFP
Sbjct: 437 LRFSRFRFKRSVQEITRYNEQRPFP 461


>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
          Length = 806

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 163 DESNRVAEK-PQVYESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEV 339
           DE N V +K  +  +SI  +  ++  + +  ++ S        RDF +S +     LD+V
Sbjct: 573 DEGNHVCKKVKETGQSISKEIQDSEKSISKEIQDSEKSISKELRDFKQSLREVRQKLDDV 632

Query: 340 KSQEMDK 360
            +++ D+
Sbjct: 633 TNKDPDE 639


>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
          Length = 234

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 43  APPIEHTIKCRNLIAVPDRDIVFKQSQLDKIPLAVIDKGVDESNRVAEKPQVYES 207
           +P I  + +      +P+   + +  Q+ + P       + ES++++E PQ+ ES
Sbjct: 108 SPQIPESPQISRSPQIPESPKISRSPQISESPQISESSQISESSQISESPQISES 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,929
Number of Sequences: 59808
Number of extensions: 291889
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)