Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p pro...    31   0.72 
AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC...    31   0.72 
AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD...    31   0.72 
AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB...    31   0.72 
AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA...    31   0.72 
AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule ...    29   5.1  

>AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p
           protein.
          Length = 1689

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 55  EHTIKCRNLIAVPDRDIVFKQSQLDKI--PLAVIDKGVDESNRVAEKPQVYESIDGDYNE 228
           E T +   L+   ++++V  + Q  K       ++K + +  ++AE+ ++   +  +   
Sbjct: 663 EGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVREMTENAIN 722

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKF 366
               +  S+E  L   +N   DF + Q  +   L E+K+Q   K F
Sbjct: 723 QIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDF 768


>AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC,
           isoform C protein.
          Length = 1652

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 55  EHTIKCRNLIAVPDRDIVFKQSQLDKI--PLAVIDKGVDESNRVAEKPQVYESIDGDYNE 228
           E T +   L+   ++++V  + Q  K       ++K + +  ++AE+ ++   +  +   
Sbjct: 626 EGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVREMTENAIN 685

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKF 366
               +  S+E  L   +N   DF + Q  +   L E+K+Q   K F
Sbjct: 686 QIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDF 731


>AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD,
           isoform D protein.
          Length = 1677

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 55  EHTIKCRNLIAVPDRDIVFKQSQLDKI--PLAVIDKGVDESNRVAEKPQVYESIDGDYNE 228
           E T +   L+   ++++V  + Q  K       ++K + +  ++AE+ ++   +  +   
Sbjct: 651 EGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVREMTENAIN 710

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKF 366
               +  S+E  L   +N   DF + Q  +   L E+K+Q   K F
Sbjct: 711 QIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDF 756


>AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB,
           isoform B protein.
          Length = 1689

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 55  EHTIKCRNLIAVPDRDIVFKQSQLDKI--PLAVIDKGVDESNRVAEKPQVYESIDGDYNE 228
           E T +   L+   ++++V  + Q  K       ++K + +  ++AE+ ++   +  +   
Sbjct: 663 EGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVREMTENAIN 722

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKF 366
               +  S+E  L   +N   DF + Q  +   L E+K+Q   K F
Sbjct: 723 QIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDF 768


>AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA,
           isoform A protein.
          Length = 1690

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 55  EHTIKCRNLIAVPDRDIVFKQSQLDKI--PLAVIDKGVDESNRVAEKPQVYESIDGDYNE 228
           E T +   L+   ++++V  + Q  K       ++K + +  ++AE+ ++   +  +   
Sbjct: 664 EGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQEKLVREMTENAIN 723

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFPLDEVKSQEMDKKF 366
               +  S+E  L   +N   DF + Q  +   L E+K+Q   K F
Sbjct: 724 QIQLEKESIEQQLALKQNELEDFQKKQSESEVHLQEIKAQNTQKDF 769


>AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule
           binding protein D-CLIP-190 protein.
          Length = 1690

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 148 IDKGVDESNRVAEKPQ-VYESIDGDYNENRPNDTLSLEYSLFRFKNAARDFNRSQKSTPF 324
           ++K + +  ++AE+ + V E  +   N+ +     S+E  L   +N   DF + Q  +  
Sbjct: 697 LEKQISDLKQLAEQEKLVREKTENAINQIQLEKE-SIEQQLALKQNELEDFQKKQSESEV 755

Query: 325 PLDEVKSQEMDK 360
            L E+K+Q   K
Sbjct: 756 HLQEIKAQNTQK 767


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,038,644
Number of Sequences: 53049
Number of extensions: 444163
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1949978112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)