Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      28   4.7  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    27   6.2  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   8.2  

>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 286 ARDFNRSQKSTPFPLDEVKSQEMDKKFTPP----DYFGDLLIWHN--DILN-SDEVPTP 441
           +RD N  +    F L E K  ++D+         +YFGD++ W N  D  N +++ P+P
Sbjct: 419 SRDVNCRRMQLDFELKETKKTDLDENVQRATRKINYFGDIVYWCNETDYSNLTNQFPSP 477


>Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical
           protein F32B4.8 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 286 ARDFNRSQKSTPFPLDEVKSQEMDKKFTPPD 378
           A DF+    STP  L +  S E +K FT P+
Sbjct: 212 APDFSTENPSTPIILSQTTSDEEEKFFTEPE 242


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 334  EVKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKDAV 456
            E +S ++DK+    D+  +++    D+LN +  P+ WKD +
Sbjct: 960  EERSSDIDKR----DFLMEMVQMIRDLLNRNAFPSTWKDMI 996


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 334  EVKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKDAV 456
            E +S ++DK+    D+  +++    D+LN +  P+ WKD +
Sbjct: 960  EERSSDIDKR----DFLMEMVQMIRDLLNRNAFPSTWKDMI 996


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 334  EVKSQEMDKKFTPPDYFGDLLIWHNDILNSDEVPTPWKDAV 456
            E +S ++DK+    D+  +++    D+LN +  P+ WKD +
Sbjct: 960  EERSSDIDKR----DFLMEMVQMIRDLLNRNAFPSTWKDMI 996


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 QLDKIPLAVIDKGVDESNRVAEKPQVYESIDGDYNENRPNDTLSLEYS 264
           ++DKI   V +KGV E   V E+    + I GD+   R    ++LEYS
Sbjct: 354 EVDKIANRVRNKGVLEMTEVFEEASKIQGISGDHFTLR-QLLINLEYS 400


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 321 RRRFLTPIKISSCIFKSEQTIFQTQRVVGTVLV 223
           RR F TP K+SS  F S+  +       G +L+
Sbjct: 14  RRTFRTPFKVSSMCFSSQNDLIALGSKTGEILL 46


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 321 RRRFLTPIKISSCIFKSEQTIFQTQRVVGTVLV 223
           RR F TP K+SS  F S+  +       G +L+
Sbjct: 14  RRTFRTPFKVSSMCFSSQNDLIALGSKTGEILL 46


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 327 WERRRFLTPIKISSCIFKSEQTIFQTQRVVGTVLVVISVDRF 202
           W+ +  LT   I   I  +  TI     V G +LVV+SV RF
Sbjct: 15  WQTKHDLTLHPIPIAILATIYTIIVVVGVTGNLLVVMSVMRF 56


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 327 WERRRFLTPIKISSCIFKSEQTIFQTQRVVGTVLVVISVDRF 202
           W+ +  LT   I   I  +  TI     V G +LVV+SV RF
Sbjct: 15  WQTKHDLTLHPIPIAILATIYTIIVVVGVTGNLLVVMSVMRF 56


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 94  DRDIVFKQSQLDKIPLAVIDKGVDESNRVAE--KPQVYESIDGDYNENRPNDTLSLEYSL 267
           +RD+V  + +LD    A++DKG DE  R  E  + +V + +   ++  + N TL+ +   
Sbjct: 561 NRDLVQAKKRLDD---AMVDKGTDELRRDVEGARNEVEKLLKMVHSLEKENLTLTAQCKQ 617

Query: 268 FRFKNAARDFNRSQKSTPFPLDEVKSQE 351
            +  +  R    S  S P  L    S +
Sbjct: 618 LKRDDTPRAGTTSAPSAPGTLTRSTSAQ 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,518,132
Number of Sequences: 27780
Number of extensions: 235685
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)