Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h04
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 148  IDKGVDESNRVAEKPQVYESIDGDYN 225
            +  G  E +R      +Y SID DY+
Sbjct: 1318 VSSGSSEDHRRPLSEHIYSSIDSDYS 1343


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 229 NRPNDTLSLEYSLFRFKNAARDFNRSQKSTPFP 327
           N  N+T  ++ SL    +A ++ N+S+  T  P
Sbjct: 283 NAENETAHIKDSLIVLTSALQEMNKSKSITEPP 315


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 RRLQREPSQRHVEFGI*FVQI 275
           R +Q    + HV FG+ FVQ+
Sbjct: 43  RPVQNMTEKVHVNFGLAFVQL 63


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 176 RLDSSTPLSITARGILSSCDCLNTMSRSGTAIKF 75
           R+   TP+    +      DC+N + + GT ++F
Sbjct: 464 RVPPGTPIYECNKRCNCDIDCINRVVQRGTKMQF 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,011
Number of Sequences: 438
Number of extensions: 2693
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)