Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h01
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    30   0.26 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   5.7  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.7  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   5.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.9  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 115 IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 201
           I+SLC LF+K+ N   + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 109 DEID--SLCFLFSKYFNQSLIVDGKGLTF 189
           DEID  SLC L  K+F  +  V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 398 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 514
           +C+S    +K QC+ C+C R  +   ++L     + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 82  VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 258
           V FE  Q L DE+  + FL +     ++ VD    T   E  K  +  ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 368 PTPAPDVDEIMCQSCKPANKI 430
           P P P VD   C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 82  VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 261
           + F     R  ++SLCFLF    NQ    D   L  F   N+ ++++       + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 393 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 301
           S+TSGA   L  V K  +M L  G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 412 ARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDELVAQK---YRKKXXXXXXXXXXXXL 242
           A  T+ L+ +G + +   C QV+HNG K G    ++   +    RK              
Sbjct: 292 ATSTNVLIWIGDKMQ---CTQVIHNGIKAGTKAKDVEKSQTLICRKSMMNLLHQLSQSLT 348

Query: 241 DSQNYFLWKQ 212
           + +NY+ WK+
Sbjct: 349 NEKNYYEWKK 358


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 416 PANKIQCFECKCRYLASSLS 475
           P   I CFE  C Y+  +LS
Sbjct: 520 PRRLISCFEAPCSYIIGTLS 539


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 16  CTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEI 117
           CT C  R++     + YD +   CF     R +I
Sbjct: 78  CTACRMRIKDYALMSGYDSYHRECFRCHDCRKQI 111


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 427 FVCGLARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDE 308
           F  G  R T D+V       ++ C  ++H    +G+L+DE
Sbjct: 146 FSSGSGRNTTDIVLFPFVLAVIKCCDIVHREFLMGNLYDE 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,303
Number of Sequences: 5004
Number of extensions: 60363
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)