Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h01
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.9  
05_02_0055 + 6185448-6185473,6186336-6186678,6187374-6187523,618...    28   5.9  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 28   7.8  
01_01_0155 - 1362710-1363267                                           28   7.8  

>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 357 HITIRRRHPTWTRSCVSRASPQT 425
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>05_02_0055 +
           6185448-6185473,6186336-6186678,6187374-6187523,
           6187640-6187906,6189187-6189276,6189802-6190136,
           6190777-6190864
          Length = 432

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 475 HPRRGLAKWLGHFFKTHVWHASHVV 549
           HPR  + KW G  F++H+W +  VV
Sbjct: 3   HPR--VTKWYGKVFRSHLWGSPAVV 25


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 505 GHFFKTHVWHASHVVRVA 558
           G +FK+H W A+H++ +A
Sbjct: 447 GFYFKSHRWRAAHIIVIA 464


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 476 CSARTPSICICTRNIEFCLRAC 411
           CS   P IC C   +E C  AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,225
Number of Sequences: 37544
Number of extensions: 350737
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)