Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h01
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8)                     30   2.0  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                29   2.6  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   4.5  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41586| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)                  28   7.9  
SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8)
          Length = 162

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 1   EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLC 129
           EGY +C  C  R+   +      RFE  CF   ++ +    +C
Sbjct: 6   EGYYDCPFCDLRIAEYVTKGESARFEACCFRQDMVNENGADIC 48


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKG 180
           EGY +C  C  R+   +     +RFE  C    ++ D   +  F+ +   N+   V G G
Sbjct: 297 EGYYDCPFCDLRIAECVTKEDSERFEACCGRQDMVNDNGANRKFIDT--VNKITEVSGNG 354

Query: 181 -LTFFTEFNKCIVSIKSSF 234
            L    E  +C  ++KS F
Sbjct: 355 RLRMVGECGEC-GAMKSKF 372


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 315 NKCPNLGPLCNTCKHITIRR 374
           NK PNLG LC TC+    +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 295 FARRVHQTSAPI*DHYAILANILQSDAGTRRGRDHVSVVQ-ARKQNSMFRVQMQILGVLA 471
           F  R HQ      + Y   + I +SD G  RGR  VS+ Q  R    +    M  LG   
Sbjct: 124 FEERKHQRDYV--EFYMDKSGICESDIGRIRGRQTVSLGQGCRNPGHVTHELMHTLGFYH 181

Query: 472 EHPR 483
           EH R
Sbjct: 182 EHTR 185


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 291  YFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANADTWR 464
            Y CAT+ + K P  GP     KHI   +R P      +  A   T    S A++D ++
Sbjct: 4805 YLCATTHT-KLPGFGPQVIRIKHIVRPKRPPKPQIDTIFNAIEPTGPTKSCAHSDIFK 4861


>SB_41586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 1   EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRD 111
           EGY +C  C  R+   +     +RFE  C    ++ D
Sbjct: 6   EGYYDCPFCDLRIAECVTKEDSERFEACCGRQDMVND 42


>SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 237 ESSQQHRQHTQCKKHFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRAS 416
           +S  + RQ T+CK     Y+  + ++ KC   G +C+ C       R    TR     + 
Sbjct: 14  KSKSKPRQITECK-----YYGDSHAAGKCKAFGQVCSKCSKKNRFARVCMSTRQDHKASQ 68

Query: 417 PQTK 428
           PQ K
Sbjct: 69  PQQK 72


>SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 164 IKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLKLYCNL 33
           IKLWLK   N  +NE +S + + A  +  +K  +   +K   +L
Sbjct: 361 IKLWLKLSNNNGNNEKLSRKASAAISNYENKNFWHRKIKQILHL 404


>SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 282 FFRYFCATSSSNKCP 326
           FFRY+C+ S S  CP
Sbjct: 36  FFRYYCSISQSEHCP 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,888
Number of Sequences: 59808
Number of extensions: 450032
Number of successful extensions: 1307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)