Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h01
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    28   6.9  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical ...    27   9.2  
AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.      27   9.2  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 212 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 36
           + L +  +KV  L    K  LK F+    +  S  S  NC +K    K  YV ++K YC+
Sbjct: 75  VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 487 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 395
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
 Frame = +1

Query: 52  RFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSS 231
           R   +   E +  E   + +E++S  F  S+Y  ++   D       T+    +  I++ 
Sbjct: 679 RMEAFAEKERLASERAAVENELESFNFECSQYLEETEFTDYMADEEKTKLEDSVKRIRAW 738

Query: 232 FENQANN-------TDNIHNVKNIFFDIFARRVHQTSAP 327
            E+           TDN+  +KN+   +  R+ H  + P
Sbjct: 739 LEDDVTKDTPTKDFTDNLLELKNVVRSVKKRQEHDKAVP 777


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +1

Query: 28  AYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNK 207
           AY+ + S+    +D FEN+ +      D++ S+   + K  +   +++    T   E   
Sbjct: 161 AYKRKKSVITEVFDEFENILWSVCSFSDKLTSIS-CYKKEMDPDCLIENVN-TLSNELEN 218

Query: 208 CIVSIKSSFENQANNTDNIH 267
               + + F     NTD IH
Sbjct: 219 -FEKVTAEFTKYLVNTDGIH 237


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = -3

Query: 281 MFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIK--LW--LKYFENKKHNESI 114
           +F+ + +++++     KL   E    LN+  K + + + IK   W  L  FEN  + E I
Sbjct: 8   IFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENGNNIEYI 67

Query: 113 SSRNNCASKHTFSKRSYVLNLKL 45
           SS +  +++H  +    +LN ++
Sbjct: 68  SSASLISNRHFITSAFSILNSQM 90


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 255 RQHTQCKKHFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRH 380
           ++  QC  +F    C +    KC  LG  C+T     I   H
Sbjct: 51  KKENQCLGNFSHRICQSCRFEKCLKLGMRCSTTNDFIINIEH 92


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 56  LTRTTASKTCVLKRNCYEMKSI--RCVF 133
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


>Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical
           protein T19C4.5 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 249 QHRQHTQCKKHFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTK 428
           Q   H   +K   R   A + S+   N   +CN+C  ++  +R+P    +  S    QT 
Sbjct: 195 QESDHLDVEKTQSRMEDAVTDSSSTDNTSNMCNSCTSLSSGQRYPKPLTTRNSETQMQTL 254

Query: 429 FNVSS 443
              SS
Sbjct: 255 KEESS 259


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 73   FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 252
            FEN  FEA  +  E  S   L S +    +  DG+G     +  +  +S+K  FE +  N
Sbjct: 891  FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948

Query: 253  TD 258
             D
Sbjct: 949  DD 950


>AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical
           protein H38K22.5c protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 533 CQTWVLKKCPNHFASPRRGCSARTPSICICT 441
           C  W L+ CP    +   G   R P I  C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517


>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +1

Query: 220 IKSSFENQANNTDNIHNVKNIFFDIFARRVHQTSAPI*DHYA---ILANILQSDAGTRRG 390
           ++   ENQ N    +   + + +DI +   H    PI D ++   I     + D+   R 
Sbjct: 512 VRQGMENQRNTFVPLEEFEELEYDILSVMAHFLLTPISDDFSKRYIKLKFFKIDS-LLRA 570

Query: 391 RDHVSVVQARKQNSMFRVQMQILGVLAEHPRRG-LAKWLGHFFKTHV 528
             +VS  + R  N+ + V + +  VL+   + G   ++L H  KT V
Sbjct: 571 TGYVS--KRRNPNNTYLVNLLLAIVLSMTEKFGYYDEFLNHAIKTSV 615


>AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 533 CQTWVLKKCPNHFASPRRGCSARTPSICICT 441
           C  W L+ CP    +   G   R P I  C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 TSSSNKCPNLGPLCNTCKHITIRRRHPT 386
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 TSSSNKCPNLGPLCNTCKHITIRRRHPT 386
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,482
Number of Sequences: 27780
Number of extensions: 349332
Number of successful extensions: 1159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)