Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19h01
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   8.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 464 SSLSTLDEGLQNGWDIFLRPMFGMP 538
           S++S L + L  G+D  +RP FG P
Sbjct: 4   SNISELLDNLLRGYDNSVRPDFGGP 28


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 355 NILQSDAGTRRGRDHVSVVQARKQN 429
           +I+Q+D  TR   D V  ++A K+N
Sbjct: 333 DIIQNDRRTRHLSDRVVALEAEKKN 357


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 497 NGWDIFLRPMF-GMPLMLYVLLRTDYKNESDVINENNLITQIFVQFF 634
           +G+DI LRP F G PL++ + L     +    +N +  IT    Q++
Sbjct: 46  DGYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTITMYLNQYW 92


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 449 CRYLASSLSTLDEGLQN 499
           C+ +ASS+S  +EGL N
Sbjct: 595 CKVIASSVSAGEEGLGN 611


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 324 PNLGPLCNTCKHI 362
           P+  P+CN CK +
Sbjct: 29  PSKEPICNICKRV 41


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 467 SLSTLDEGLQNGWDIFLRPMF 529
           S    DEG    W+  LRP F
Sbjct: 16  SFEDSDEGSNWNWNTLLRPNF 36


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 467 SLSTLDEGLQNGWDIFLRPMF 529
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 467 SLSTLDEGLQNGWDIFLRPMF 529
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 467 SLSTLDEGLQNGWDIFLRPMF 529
           S    DEG    W+  LRP F
Sbjct: 60  SFEDSDEGSNWNWNTLLRPNF 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,220
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)