Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g23
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034778-1|AAH34778.1|  477|Homo sapiens potassium voltage-gated...    30   7.2  
BC027932-1|AAH27932.1|  477|Homo sapiens potassium voltage-gated...    30   7.2  
AB032970-1|BAA86458.1|  489|Homo sapiens KIAA1144 protein protein.     30   7.2  

>BC034778-1|AAH34778.1|  477|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 2
           protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   ENEGFCTISTMNFWATFSICLVGY 74
           ENEG  TI    +WAT S+  VGY
Sbjct: 354 ENEGLATIPACWWWATVSMTTVGY 377


>BC027932-1|AAH27932.1|  477|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 2
           protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   ENEGFCTISTMNFWATFSICLVGY 74
           ENEG  TI    +WAT S+  VGY
Sbjct: 354 ENEGLATIPACWWWATVSMTTVGY 377


>AB032970-1|BAA86458.1|  489|Homo sapiens KIAA1144 protein protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   ENEGFCTISTMNFWATFSICLVGY 74
           ENEG  TI    +WAT S+  VGY
Sbjct: 366 ENEGLATIPACWWWATVSMTTVGY 389


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,211,866
Number of Sequences: 237096
Number of extensions: 1871795
Number of successful extensions: 7890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7890
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)