Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19g22
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 34 0.099
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 34 0.099
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 31 0.92
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 30 1.2
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 1.2
AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical ... 30 1.2
U41625-2|ABS19463.1| 584|Caenorhabditis elegans Hypothetical pr... 29 2.1
U41625-1|AAA83325.2| 586|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical p... 29 2.8
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 29 2.8
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 29 3.7
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 28 4.9
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 28 4.9
Z83102-3|CAB05466.1| 399|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical p... 28 6.5
Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical... 28 6.5
AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical... 28 6.5
AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H... 28 6.5
AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H... 28 6.5
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 27 8.6
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 27 8.6
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 33.9 bits (74), Expect = 0.099
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 84 KSLKLNEEDSDGS-GQGAEPEEFQDSG-EDWTPDADSNEPASR---TSRKRVSKPPVNNT 248
K +K +ED + S G G+EP++ DSG E + +EP S S++R +P
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPKEKRE 534
Query: 249 KKKRK 263
KK+++
Sbjct: 535 KKEKR 539
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 84 KSLKLNEEDSDGS-GQGAEPEEFQDSGED----WTPDADSNEPASRTSRKRVSKPPVNNT 248
K +K + D D S G G+EP++ DSG + T ++D +E + +K+ SK N
Sbjct: 479 KDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGESDPDE-ENIEPKKKESKEKKNKR 537
Query: 249 KKKRK 263
+KK K
Sbjct: 538 EKKEK 542
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNN 245
KK K K K ++ + G + E E +++ G D +D E + + ++ S +
Sbjct: 48 KKSMKSKKSKKSKREKKGDNED-EKENYKEDGNDHNNGSDRKEGSKKKKSRQKSMKSSRS 106
Query: 246 TKKKR 260
+KKR
Sbjct: 107 KRKKR 111
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 102 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASR 206
EE+S+GS G+E E ++ ED D D EPA +
Sbjct: 214 EEESEGSEDGSEAFEASEASED---DEDDEEPAKK 245
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 33 SLSYF-SRTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRT 209
S SY + T P LK + ++ + P Q S +P A E SR
Sbjct: 75 SKSYMPASTAPTSASATAPDLKKEKAPAEKPSKPTAPPGVQKSSS--SPSASKAE--SRP 130
Query: 210 SRKRVSKPPVNNTKKKRKN 266
RKR+S PP N +K++++
Sbjct: 131 LRKRISPPPSENREKEKQS 149
>AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical
protein R119.5 protein.
Length = 659
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +3
Query: 78 KRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDAD-----SNEPASRTS-RKRVSKPPV 239
+R + L+E++ + S EP+E + + D S +PAS TS R+R+ P
Sbjct: 524 ERPNGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTTSRRRRIRSPKS 583
Query: 240 NNTKKKRKN 266
+ KK RK+
Sbjct: 584 ESAKKPRKS 592
>U41625-2|ABS19463.1| 584|Caenorhabditis elegans Hypothetical
protein K03A1.2b protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSG-EDWTPDADSN-----EPASRTSRKRVS 227
KK++ +K+ +D D G + E +D+G +D D D + + S +K+
Sbjct: 36 KKVKVKKAELTAAQDEDDEGSKSLDEVEEDAGIDDDEQDDDEDVKEVPKKKSHVKQKKSK 95
Query: 228 KPPV--NNTKKKRKN 266
KPP + T+K +KN
Sbjct: 96 KPPAKKDKTRKSKKN 110
>U41625-1|AAA83325.2| 586|Caenorhabditis elegans Hypothetical
protein K03A1.2a protein.
Length = 586
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSG-EDWTPDADSN-----EPASRTSRKRVS 227
KK++ +K+ +D D G + E +D+G +D D D + + S +K+
Sbjct: 36 KKVKVKKAELTAAQDEDDEGSKSLDEVEEDAGIDDDEQDDDEDVKEVPKKKSHVKQKKSK 95
Query: 228 KPPV--NNTKKKRKN 266
KPP + T+K +KN
Sbjct: 96 KPPAKKDKTRKSKKN 110
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNN 245
K ++K+K + L++ ++ S + + DS + D DS++ +S +S S+P
Sbjct: 680 KGLKKKKGM-LDQLKAESSSDSSSSSDSSDSSDSSDSD-DSSDSSSDSSSSSESEPEPPK 737
Query: 246 TKKKRKN 266
KKK+KN
Sbjct: 738 -KKKKKN 743
>Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical
protein C18E9.2a protein.
Length = 364
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPV-- 239
KK +K K EE+ D E +E +D + A +++ + + +S PP
Sbjct: 293 KKSKKEKDSDAEEEEQDHIAAEQEQKEEEDDDAEKNSQASTDDNYEKIEDEEISAPPSPS 352
Query: 240 NNTKKKRK 263
++ +KR+
Sbjct: 353 DDAPRKRR 360
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 66 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNN 245
K ++K+K + L++ ++ S + + DS + D DS++ +S +S S+P
Sbjct: 680 KGLKKKKGM-LDQLKAESSSDSSSSSDSSDSSDSSDSD-DSSDSSSDSSSSSESEPEPPK 737
Query: 246 TKKKRKN 266
KKK+KN
Sbjct: 738 -KKKKKN 743
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 99 NEEDSDGSGQGAEPEEFQDSGE 164
+EED DGSG G E+ +D E
Sbjct: 65 DEEDDDGSGSGGPEEDVEDPNE 86
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 102 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 200
EE+ +G+G + EE +D ED D EP+
Sbjct: 360 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 392
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 102 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 200
EE+ +G+G + EE +D ED D EP+
Sbjct: 348 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 380
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 583 ICVKLFPFDSIG-INFCNNALPSIFHKFSSSSFDITVSPS 467
ICVK P+D+I IN N H++S +SF + P+
Sbjct: 71 ICVKKCPYDAIKIINLPANLANETTHRYSQNSFKLHRLPT 110
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 105 EDSDGSGQGAEPEEFQDS----GEDWTPDADSNEPASRTSR 215
EDS S + EP+E +++ DWTP SNE R R
Sbjct: 365 EDSADSSRAIEPQEPEETYFSDWSDWTPCTKSNERQVRRRR 405
>Z83102-3|CAB05466.1| 399|Caenorhabditis elegans Hypothetical
protein C54C8.4 protein.
Length = 399
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 631 NNCHGCQHSTQNTHMYICVKLFPFDSIGINFCNNA 527
N+ HG ++ H+++ KLFP + I I+ C A
Sbjct: 199 NSSHGSENGA--LHIFLAEKLFPHNQIDIDVCRIA 231
>Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical
protein C01H6.7b protein.
Length = 582
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 21 RGSVSLSYFSRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEPE-----EFQDSGEDWTPD 179
RG + S + +P R K +K E E+ D ++PE E ++SG++ T
Sbjct: 20 RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGDEMTTP 79
Query: 180 ADSNEPASRTSRKRVSKPPVNNTKKKRK 263
+ RK+ P + KK+K
Sbjct: 80 SRKTPGGGAGGRKKKRAPLTDYHLKKKK 107
>Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical
protein C01H6.7 protein.
Length = 636
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 21 RGSVSLSYFSRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEPE-----EFQDSGEDWTPD 179
RG + S + +P R K +K E E+ D ++PE E ++SG++ T
Sbjct: 20 RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGDEMTTP 79
Query: 180 ADSNEPASRTSRKRVSKPPVNNTKKKRK 263
+ RK+ P + KK+K
Sbjct: 80 SRKTPGGGAGGRKKKRAPLTDYHLKKKK 107
>U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical
protein C16A3.6 protein.
Length = 323
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +3
Query: 102 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKK 257
+ DS+ +E +DS ED D +K+V K P T KK
Sbjct: 241 DTDSENEDNWQPEQEQEDSDEDDEEGGDEPMEIEEPPKKKVKKEPKKKTGKK 292
>U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical
protein T14E8.2 protein.
Length = 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/60 (16%), Positives = 29/60 (48%)
Frame = +3
Query: 81 RKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKKR 260
+ + +NE+D D + E + ++ ++ D+++ R+R + ++K++R
Sbjct: 243 KSKMYMNEKDDDDVNKSVEESDEEEENQESEEQEDNDKAEKEEERRRQEEAARQHSKRRR 302
>AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical
protein Y18D10A.6b protein.
Length = 655
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 36 LSYFSRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 206
+S+ +R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 207 TSR 215
R
Sbjct: 551 AGR 553
>AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical
protein Y18D10A.6a protein.
Length = 681
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 36 LSYFSRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 206
+S+ +R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 207 TSR 215
R
Sbjct: 577 AGR 579
>AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H
exchanger isoform 8b protein.
Length = 655
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 36 LSYFSRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 206
+S+ +R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 207 TSR 215
R
Sbjct: 551 AGR 553
>AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H
exchanger isoform 8a protein.
Length = 681
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 36 LSYFSRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 206
+S+ +R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 207 TSR 215
R
Sbjct: 577 AGR 579
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 EDSDGSG-QGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKK 254
E DG+ +G + ++ QD+ + SNE VSKP NN +K
Sbjct: 519 EKKDGNECEGEDNKDRQDTPAETENGVSSNESKLENEEVGVSKPESNNNEK 569
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 EDSDGSG-QGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKK 254
E DG+ +G + ++ QD+ + SNE VSKP NN +K
Sbjct: 524 EKKDGNECEGEDNKDRQDTPAETENGVSSNESKLENEEVGVSKPESNNNEK 574
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 EDSDGSG-QGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKK 254
E DG+ +G + ++ QD+ + SNE VSKP NN +K
Sbjct: 519 EKKDGNECEGEDNKDRQDTPAETENGVSSNESKLENEEVGVSKPESNNNEK 569
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 EDSDGSG-QGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKK 254
E DG+ +G + ++ QD+ + SNE VSKP NN +K
Sbjct: 524 EKKDGNECEGEDNKDRQDTPAETENGVSSNESKLENEEVGVSKPESNNNEK 574
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +3
Query: 63 IKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVN 242
++K +K + + S S G+ SG + + S SR+ R+R ++PP
Sbjct: 2 VEKEETKKRAR-SSSSSSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRRDTRPPAR 60
Query: 243 NTKKK 257
+ +
Sbjct: 61 GGRSR 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,252
Number of Sequences: 27780
Number of extensions: 272044
Number of successful extensions: 1197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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