Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g21
         (445 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000150A0F1 Cluster: hypothetical protein TTHERM_0049...    33   3.7  
UniRef50_A1D227 Cluster: U4/U6 small nuclear ribonucleoprotein, ...    33   3.7  
UniRef50_Q7NLP7 Cluster: Folylpolyglutamate synthase; n=1; Gloeo...    32   4.8  
UniRef50_A6T0G4 Cluster: Uncharacterized conserved protein; n=1;...    32   4.8  
UniRef50_Q5U2M8 Cluster: Mediator of DNA damage checkpoint prote...    32   4.8  
UniRef50_A4J0V4 Cluster: Metal dependent phosphohydrolase; n=1; ...    32   6.4  
UniRef50_A6U6T3 Cluster: Polysaccharide deacetylase; n=4; Rhizob...    31   8.5  
UniRef50_Q1DZ25 Cluster: Putative uncharacterized protein; n=1; ...    31   8.5  

>UniRef50_UPI000150A0F1 Cluster: hypothetical protein
           TTHERM_00499500; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00499500 - Tetrahymena
           thermophila SB210
          Length = 475

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 242 LPVPDSRGHPLPSMWNQRSLKTFLQHRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLS 415
           +PVP+ +  P  +     +    L  RNS  +++RL Q++V+   +E+    NWRSLS
Sbjct: 29  VPVPNLQALPQTTQQTTSTNPGSLSKRNS--IIRRLSQRKVSKFQSEEANRPNWRSLS 84


>UniRef50_A1D227 Cluster: U4/U6 small nuclear ribonucleoprotein,
           putative; n=15; Pezizomycotina|Rep: U4/U6 small nuclear
           ribonucleoprotein, putative - Neosartorya fischeri
           (strain ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 591

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +1

Query: 247 RARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEPI 420
           RAR AG    +DVE AF+   PPA E+    + LV+  +DY +  +E   +++ P+ I
Sbjct: 255 RARQAGIDEDLDVEKAFLVPAPPAIEW--WDEGLVNG-NDYSAIDDERNLKIDTPDSI 309


>UniRef50_Q7NLP7 Cluster: Folylpolyglutamate synthase; n=1;
           Gloeobacter violaceus|Rep: Folylpolyglutamate synthase -
           Gloeobacter violaceus
          Length = 413

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 206 KRLLWPSNAFGTLPVPDSRGHP 271
           K LL P +AF  +PVPD+R HP
Sbjct: 335 KALLRPGDAFVAVPVPDARSHP 356


>UniRef50_A6T0G4 Cluster: Uncharacterized conserved protein; n=1;
           Janthinobacterium sp. Marseille|Rep: Uncharacterized
           conserved protein - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 286

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 220 ALQRLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESD 378
           A+  L++L   RL   + A+ + PA VE F P ++  V    L+      ESD
Sbjct: 178 AISGLYDLEPIRLCYLNKAVGLTPAQVEQFSPTKKLPVVKTPLILTVGGNESD 230


>UniRef50_Q5U2M8 Cluster: Mediator of DNA damage checkpoint protein
           1; n=4; Rattus norvegicus|Rep: Mediator of DNA damage
           checkpoint protein 1 - Rattus norvegicus (Rat)
          Length = 1279

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 262 GTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFP----ELEVPEPIEVS 429
           G ++  D EP+    F P  E   +P++L+++ S  +S  +  FP    EL +PE +   
Sbjct: 777 GKASGDDPEPSDHRLFSPVPEASASPQSLLTSQSQKQSTPQPMFPTSSSELALPETLHTK 836

Query: 430 KN 435
            N
Sbjct: 837 PN 838


>UniRef50_A4J0V4 Cluster: Metal dependent phosphohydrolase; n=1;
           Desulfotomaculum reducens MI-1|Rep: Metal dependent
           phosphohydrolase - Desulfotomaculum reducens MI-1
          Length = 472

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 227 NAFGTLPVPDSRGHPLPSMWNQRSLKTFL-QHRNSKLLLKRLCQQRVTMKATEKRPSLNW 403
           N  G   V   R HP+P +     L+  + +     L+L++LC+++VT   T+ + +L W
Sbjct: 401 NLLGKFIVEKDRFHPVPYLSGAALLELGIPEGPEVGLILEKLCEEQVTGSITDTKTALLW 460


>UniRef50_A6U6T3 Cluster: Polysaccharide deacetylase; n=4;
           Rhizobiaceae|Rep: Polysaccharide deacetylase -
           Sinorhizobium medicae WSM419
          Length = 352

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +1

Query: 217 LALQRLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFP 396
           LA  RL    R R A   T   V P    +F P    E+TP+ L  A    + DG    P
Sbjct: 28  LARARLMGAARGRGA-VFTLHHVRPKVPRSFDPNAHLEITPEFLEDAILTLKRDGYRFIP 86

Query: 397 ELEVPEPI 420
             E+P  +
Sbjct: 87  LDELPSSL 94


>UniRef50_Q1DZ25 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 344

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +2

Query: 245 PVPDSRGHP--LPSMWNQRS--LKTFLQHRNSK 331
           P   SRG    + S WN RS  +KTFL+HRN+K
Sbjct: 6   PKSPSRGDDVLITSSWNNRSDSMKTFLKHRNAK 38


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,278,943
Number of Sequences: 1657284
Number of extensions: 9132567
Number of successful extensions: 29610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29605
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)