Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g21
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        27   1.3  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   2.3  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    25   5.2  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    24   9.1  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    24   9.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   9.1  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 275 PSMWNQRSLKTFLQ--HRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLSQLRLAKT 436
           P  W  + + + L    +NS++     C Q+ T++  +K    NW  ++ L    T
Sbjct: 274 PPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTT 329


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 330 FEFLCWRKVFNERWFHIDGSGCPRE 256
           F+ +  R  F  RWF ++G G PRE
Sbjct: 14  FDVIVARSAFG-RWFRLEGCGHPRE 37


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 SRGHPLPSMWNQRSLKTFLQHRNSKLLLKR 346
           +R H L S  NQ+    FL+  NSKL+ +R
Sbjct: 33  ARIHQLISQRNQKFQANFLEWENSKLVYRR 62


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 WPSNAFGTLPVPDSRGHPLPSMWNQRS 298
           WPS    T  +  + G P PSMW + S
Sbjct: 217 WPSELRLTSSIIQTLGTPNPSMWPELS 243


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = -3

Query: 356 ADTSALGVTSNSCAGGKFSTNAGSTSMAVD----VPASLARVRFQRRWRAKGVSSRCISM 189
           +DTS L +TS++   GK + ++   SM  D     P SL   +  ++     +  + I+ 
Sbjct: 128 SDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQLRL-QKLINS 186

Query: 188 AELASIFP*KA*YDKILKRLRFV--RISRTVDSTNLQY 81
           +ELA I        K+  R R V  R+S+ ++  NL+Y
Sbjct: 187 SELAQI---DLELSKLYSRRRQVLERLSK-IEEQNLKY 220


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 355 ATSDYESDGEEAFPELEVPEPIEVSKNF 438
           +  DY+ D E   PE + P+  E  K++
Sbjct: 2   SAKDYDFDIESVLPEEKAPQVSEAKKDY 29


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 313 EESFQRTLVPHRWQWMSPRVWHG*GSKGVGGPKESL 206
           EES +R LV  R     P+V  G  S   GGP +S+
Sbjct: 564 EESMRRWLVRLRQACCHPQVGFGNKSAFGGGPMKSI 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,090
Number of Sequences: 5004
Number of extensions: 36609
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)