Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19g21
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0095 + 17266595-17266741,17267235-17267807 29 1.7
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 29 2.2
12_01_0419 - 3316866-3318172,3318249-3318360 28 2.9
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 28 3.9
01_06_0934 - 33167569-33167720,33167820-33168069 28 3.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 27 5.1
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 27 6.8
05_06_0059 - 25264704-25266032 27 6.8
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 6.8
11_04_0122 + 13689847-13690704 27 9.0
10_08_0595 - 19074594-19075063,19075582-19075851,19075963-19075999 27 9.0
05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193... 27 9.0
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 9.0
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 278 MAVDVPASLARVRFQRRWR--AKGVSSRCISM 189
+ V VPAS R +RRWR A GV C+ +
Sbjct: 122 VVVQVPASSTRASSRRRWRIPAAGVGCSCVGV 153
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = -3
Query: 293 AGSTSMAVDVPASLARVRFQRRWRAKGVSS-----RCISMAELASIFP 165
+ + ++A +PA++A V+ QRR R++G S RC ++A ++I P
Sbjct: 2 SAAAAIASPIPAAIAVVQQQRRGRSRGGGSGAAAVRCSAVAPTSAIAP 49
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 286 EPAFVENFPPAQEFEVTPKALVSATSDYESDGEE 387
EP + P A E E PK S + DY + GEE
Sbjct: 378 EPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEE 411
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 277 IDVEPAFVENFPP-------AQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKN 435
+D+ +++++ PP +Q+F+ P A + DYE + + P +V E N
Sbjct: 257 VDLAKSYMQSLPPWQSPFLGSQKFKTPPSAGLHMY-DYEGKSKYSLPSSKVTTKEEYLSN 315
Query: 436 FW 441
FW
Sbjct: 316 FW 317
>01_06_0934 - 33167569-33167720,33167820-33168069
Length = 133
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 212 VSSRCISMAELASIFP*KA*YDKILKRLRFVRISRTVDSTN 90
VSS+C+S AE++S P K KI+K F R+ N
Sbjct: 21 VSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRVN 61
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 TGAVLKFYHTKLSKGRCSLTQP-WKCNAKRLLWPSNA 232
T KF H+ ++K RCS+ + W +RL+ S +
Sbjct: 140 TSFAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQS 176
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 322 PVLEESFQRTLVPHRWQWMSPRVWHG 245
PV E ++R H W W+ + W G
Sbjct: 200 PVDVEHYRRLRNNHNWAWLMDKCWRG 225
>05_06_0059 - 25264704-25266032
Length = 442
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +1
Query: 280 DVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEE 387
+ P +ENFP A + ++P + + +Y D ++
Sbjct: 280 EASPVAIENFPEATKSSISPSSDEPSLGNYSGDDDD 315
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 327 EFLCWRKVFNERWFHIDGSGCPRESGTGKVPKALEGQRSLFA 202
EF+C F+ RW G PR+ TG V +E + LFA
Sbjct: 355 EFIC---AFHVRWLW-QGWKTPRKPWTGHVMPCIEKDKQLFA 392
>11_04_0122 + 13689847-13690704
Length = 285
Score = 26.6 bits (56), Expect = 9.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 235 WNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVT-----PKALVSATSDYESDGEEAFPE 399
WN T + +AG+ IDV A + A + V + T DYE+ A PE
Sbjct: 134 WNKTSSMVAGSYEYIDVVVAAAPDAAEATRYIVDVGFAGEFEVARPTEDYEA-VRSALPE 192
Query: 400 LEVPEPIEVSK 432
+ V P +V K
Sbjct: 193 VLVARPDDVRK 203
>10_08_0595 - 19074594-19075063,19075582-19075851,19075963-19075999
Length = 258
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 4 WYSSCAAVRFTSLATCDEFTYSVILLYCRFVESTVREIRTNRSRFK 141
W S+ AAV A C E T V + C +ES ++I+ N +F+
Sbjct: 92 WSSASAAVTPAGYANCKELTGRVSFM-CA-LESQDKQIQVNHRKFQ 135
>05_01_0254 -
1938343-1938447,1938545-1938700,1939209-1939472,
1939563-1939777,1939863-1940672,1941758-1942388
Length = 726
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 229 RLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDG 381
R+++L AR + + AF + PP + F V+P L + + +E G
Sbjct: 96 RVYDLEEARKFCSERCLVASAAFGASLPPDRPFGVSPDRLDALVALFEGGG 146
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.6 bits (56), Expect = 9.0
Identities = 26/84 (30%), Positives = 35/84 (41%)
Frame = +1
Query: 172 MLANSAMEMQREETPLALQRLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALV 351
+LA A+ ++ E A QR N L AI A VE PA+E + V
Sbjct: 1617 VLAEQAVALEME----AAQRA-NDAELALQKAEKAISSVDAVVELPAPAEEQVSDEEDNV 1671
Query: 352 SATSDYESDGEEAFPELEVPEPIE 423
S DY SD + PE + +E
Sbjct: 1672 SEVYDYSSDAIDDIPERDEVSNVE 1695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,817
Number of Sequences: 37544
Number of extensions: 273779
Number of successful extensions: 891
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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