Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g21
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)                    30   0.75 
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 29   2.3  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               27   5.3  
SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)                   27   7.0  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_39821| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=3.1)            27   9.2  
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)               27   9.2  
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)                 27   9.2  

>SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)
          Length = 375

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 301 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEP 417
           E  PP+Q+ EVT   L    +D +   EE+FPE+   EP
Sbjct: 21  EMAPPSQQ-EVTKAKLRPLANDNKEKKEESFPEIPYKEP 58


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 IILSFLREDAR*LSHGNATRRDSFGPPTPLEP 242
           +ILSF    AR  SHG  +RR   G PT   P
Sbjct: 164 LILSFALRFARLESHGERSRRSGGGLPTTFTP 195


>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 301 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEV 408
           ENFPP +E +   K +V    D   DG+ +  ELEV
Sbjct: 58  ENFPP-EESKQKLKIIVETKIDVNKDGKVSLQELEV 92


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 322 EFEVTPKALVSATSDYESDGEEAFPELEVPEPIE 423
           EFE + +A + A S    +G+  FP  +VP  +E
Sbjct: 423 EFEASMRANIPAASPGPPEGDVGFPSRDVPIDVE 456


>SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -3

Query: 344 ALGVTSNSCAGGKFSTNAGS 285
           A G  SNSC GG  S NAGS
Sbjct: 493 ASGSRSNSCGGGGGSYNAGS 512


>SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)
          Length = 370

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 248 VPDSRGHPLPSMWNQRSL---KTFLQHRNSKLLLKRLCQQRVTMKATEKRPS 394
           +P+   HPLPS   QR +   +   + R  K  LKRL      +KA  K  S
Sbjct: 3   IPNVARHPLPSCKKQRDILRKQKAKRRRRIKQCLKRLRPINARIKALRKSSS 54


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 64   YSVILLYCRFVESTVREIRTNRSRF 138
            + V+LL+C F+    ++IRT R ++
Sbjct: 2394 FFVVLLFCIFIYDEAKQIRTLRKKY 2418


>SB_39821| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=3.1)
          Length = 213

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 4   WYSSCAAVRFTSLATCDEFTYSVILLYCRFVES 102
           W   C A+     +T   + Y  +LLYCR V S
Sbjct: 75  WRFHCIAISLYRGSTVLSYRYIEVLLYCRIVIS 107


>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
          Length = 487

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 143 FYHTKLSKGRCSLTQPWKCNAKRLLWPSNAFGTLP--VPDSRGHPLPSMWNQRSLKTFLQ 316
           F HT  +  +CS+ + W  N   L+  +     +   V    G  L S   +++LK  LQ
Sbjct: 20  FIHTNQTPVKCSVCEKWLRNEYALIGHNRIEHAVRNFVCQHCGKKLAS---KKTLKCHLQ 76

Query: 317 HRNSKLLLK-RLCQQR 361
           H   +L  K R C +R
Sbjct: 77  HHTGELPYKCRFCDKR 92


>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
          Length = 335

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 214 PLALQRLWNLTRARLAGTSTAIDVE 288
           PLAL+ LW + R RL  T T + ++
Sbjct: 75  PLALRILWKVVRNRLCETVTELQIK 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,696
Number of Sequences: 59808
Number of extensions: 291659
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)