Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g21
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.0  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 312 RKVFNERWFHIDGSGCPRESGTGK 241
           R+   E W H+D S  P +S + +
Sbjct: 61  RRKLEENWIHVDISFLPEKSTSSR 84


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 235 WNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEV-P 411
           W LT  +L  TS+   VEP     +       V     +S+  +YE    + FP  E  P
Sbjct: 76  WLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVA----ISSRMEYECSRIDYFPNEEYSP 131

Query: 412 EP 417
           +P
Sbjct: 132 DP 133


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 311 LQHRNSKLLLKRL 349
           LQHR S  +LKRL
Sbjct: 57  LQHRGSSGMLKRL 69


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 189 HGNATRRDSFGPPTPLEPYPCQTRGDIH 272
           HGN T   + GPP     +  Q+   +H
Sbjct: 338 HGNHTMGPTMGPPHHHHHHQTQSLQHLH 365


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -2

Query: 327 EFLCWRKVFNERW 289
           +F  WR +F + W
Sbjct: 143 DFESWRPIFRQNW 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,279
Number of Sequences: 438
Number of extensions: 2771
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)