Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g20
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   259   3e-70
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.3  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   5.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  259 bits (634), Expect = 3e-70
 Identities = 112/152 (73%), Positives = 139/152 (91%)
 Frame = +3

Query: 171 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 350
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 351 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 530
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 531 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIV 626
           +G PHTVP KV+GKCGSVTVRL+PAPRG G+V
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLV 178


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 168 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 43
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 536 KATHRPLQGHRQVWFCNSPADSCPSWYWN 622
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 497 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 363
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 174 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 296
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 542 WLSDLVTPVTSSNW*NRQLSKDNSASN 462
           ++S++VTP T++NW N   S  +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 280 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 390
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,346
Number of Sequences: 5004
Number of extensions: 51392
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)