Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g18
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    75   7e-15
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    28   0.74 
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.74 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.3  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   5.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.1  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 74.9 bits (176), Expect = 7e-15
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = +1

Query: 169 KFTIDCTHPAEDSILXVGNFEKYLKEHVXVEGKTNNLSNHVVVARD-KTKVAITADIPFS 345
           K+ ID T    D I  V  FEKYL + + V+GKT NL + VVV+R+  +K+A+ A I FS
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70

Query: 346 XXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 453
                             DWLRVV++    YELRY+
Sbjct: 71  GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 339 RNVCGDSDFRLIPGDDNVIA*VICFALNXDVFLQVFLEVTY 217
           R + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 150 DAFAADFATLHSFFASLLVQLGFLSRRF 67
           D +  DFAT H+ + + L  +GFLS  F
Sbjct: 88  DLYILDFATQHNLYVASLRNMGFLSLVF 115


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 KFTIDCTHPAEDSILXVGNFEKYLKEHVXVEGKTNNL 279
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 285 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 395
           SR R +  +  ++  R SF  +VPE +  TLP+   F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 13  FYGNCSTRDSFATMAVTKKPAAK 81
           F+ NC    SFAT + T+K A++
Sbjct: 438 FFQNCLQESSFATESSTEKSASE 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,018
Number of Sequences: 5004
Number of extensions: 28357
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)