Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g16
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   1.8  
SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 56  YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 151
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 488 CIKMKRVKCNKVRTVTEIVNSDEKIQKT 571
           CIK++ V CN   T+ ++VN+ +    T
Sbjct: 8   CIKLENVTCNSRYTMNQLVNTSQATSLT 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,568,140
Number of Sequences: 59808
Number of extensions: 271523
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)