Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g15
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               30   1.5  
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)              29   4.5  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    28   7.9  

>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 512  DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKS 643
            + +L + +I  K L+++ I K+  N  GT+ +   T  DYG ++
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYGSRN 1418


>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 374 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 541
           +L L  L E  P+L ++    +SD+  +  ++L N     R    R+  GD    Q+ +A
Sbjct: 77  SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136

Query: 542 EKPLSIDDIVKEGSNKV 592
           E    ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 416  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 586
            G  SE++    +K ++   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 833  GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSD 889


>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 416 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 586
           G  SE++    +K  +    NA+   L  AHG   LS+  + E  L+  D+V  GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSD 181


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 449 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 330
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 167 DKLFAIVNNVAAERRLVDQIHICLIH 90
           ++LF I+ N ++ RRLVD    CL H
Sbjct: 558 ERLFFILENFSSNRRLVDLASQCLWH 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,241,155
Number of Sequences: 59808
Number of extensions: 399122
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)