Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19g12
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 30 1.5
09_01_0150 - 2244757-2245303,2252925-2253277 29 3.4
01_07_0229 + 42161770-42164562 29 3.4
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 29 4.5
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 29 4.5
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 5.9
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175... 28 5.9
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 28 5.9
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677... 28 7.8
01_01_0285 - 2360799-2362631 28 7.8
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 30.3 bits (65), Expect = 1.5
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 1/148 (0%)
Frame = +1
Query: 178 FCNDPHLCKIIEN-NYNYCMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYS 354
FC DP L +II ++C APA + ++ + K ++GH +L Y
Sbjct: 331 FCLDPPLQEIIGTWECSWCKSN-AAPAVKVTEVLTSKKIQ---RLVGHRRILQEADFQYQ 386
Query: 355 FLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYDSLQELHE 534
FL +W L H+ + E L P V L+ + +E + D + + H
Sbjct: 387 FLVKWQSLSHHHDCWVPLEWLHVSDPLRVQSYLNKNCLPKE--VYSEDQRKLEWFEVDHA 444
Query: 535 MGCVLVLWSYGSRDHVAHSMRDADLEGY 618
+ C G D +A + D +GY
Sbjct: 445 IACRRKFHHEGLCDVLATFQDNQDFDGY 472
>09_01_0150 - 2244757-2245303,2252925-2253277
Length = 299
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 325 VLSNKPPMYSFLKEWFLLP 381
V + PP Y+FLKE FLLP
Sbjct: 4 VQRSTPPFYNFLKEGFLLP 22
>01_07_0229 + 42161770-42164562
Length = 930
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 61 CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 207
CL+LN +IK + + + LKYL F E + + P+L K+
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVI--PNLSKL 602
>04_04_0487 -
25585229-25585540,25585627-25585745,25586029-25586194,
25586295-25586427,25586527-25586618,25586739-25586925,
25587183-25587271,25587318-25587379,25587462-25587567,
25587754-25588052,25588181-25588288,25588369-25588439,
25588792-25588871
Length = 607
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 229 CMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWF---LLPHYKV 393
CM+ + + +I ++ +F P +G + + N P +++ L +F +P+YKV
Sbjct: 469 CMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKV 526
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 505 VYDSLQELHEMGCV---LVL-WSYGSRDHVAHSMRDADLEGYFDII 630
VYDSL+++ + V L L +SY S HVAH DL Y D+I
Sbjct: 76 VYDSLKQICNIDVVPYSLTLGYSYWSAGHVAHLNIPDDLLPYKDVI 121
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 450 FGQHSHNRRGANSNSRFVCV*QLAGIARNGLRFSLVVVWQ 569
F + HNRR NS+ V + L+ + + F + ++W+
Sbjct: 204 FSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWK 243
>03_01_0222 -
1756769-1756801,1756889-1756917,1756975-1757859,
1758244-1759273,1759354-1759401,1759626-1760480
Length = 959
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 43 LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 144
LQ W RL + I+KR + + DLKYL E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 82 IIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADN 261
II+RH L ++ L + E + + + F + D K+I N ++ +++F+ A
Sbjct: 397 IIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNMFD--VEVFEQIA-- 452
Query: 262 MCDIRHNIKR 291
+ RHN+KR
Sbjct: 453 -VEYRHNLKR 461
>04_04_1258 +
32165918-32166041,32167218-32167384,32167569-32167769,
32168472-32168631,32168729-32168942,32169160-32169307
Length = 337
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 94 HVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIF 243
HVL ++D++YL EK + Y + + + CK+ E N + +F
Sbjct: 143 HVLDEDSWSDVEYLTKEKPPAWAYSVSKVLMEKAACKLAEENNISLITVF 192
>01_01_0285 - 2360799-2362631
Length = 610
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +1
Query: 100 LVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADNMCDIRH 279
L+++ + Y+ E Y+FF ++ + +C+ + N ++ + + P +C
Sbjct: 189 LLVTRLVIVWYIFLESYQFFTFIFSDWHKVKMMCRYVRNE-SWHRALMEVPLKVLCHF-S 246
Query: 280 NIKRAFKTPVLGHMCVLSNKPPMY--SFLKEWF 372
I R +K +G +L N P + +FL WF
Sbjct: 247 TITRYWK-GTIGQYFLLDNIHPHWIKTFL-SWF 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,451
Number of Sequences: 37544
Number of extensions: 416979
Number of successful extensions: 982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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