Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g12
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                29   3.4  
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)               29   4.5  
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)                29   4.5  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     28   6.0  
SB_17039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 508 YDSLQELHEMGCVLVLWSYGSRDH-VAHSMRDADLEGYFDIIISEGSTVREERSD 669
           Y++ Q++ EM C+ +LW++    H   H+MR   +E   D ++ +      E  D
Sbjct: 224 YNNEQQMLEMHCLSLLWNFSETSHDRLHAMRRGAVEKVVDALLLDPHMQAPEEDD 278


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 454 DSTLITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYGSRDHV 582
           D   +  EE++    S     +  + E G V +LW  GSR HV
Sbjct: 420 DDLSLHNEEEVAATPSSCVGQVASIDEAGNVHILWIDGSRSHV 462


>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
           AT  T  +    T  TV    K     CAT  T  N +S          +C++ TC  +A
Sbjct: 31  ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90

Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
           TN +C    +     +T  +S ++A +
Sbjct: 91  TNTKCYSATRATVATNTKCYSATRATV 117


>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
           AT  T  +    T  TV    K     CAT  T  N +S          +C++ TC  +A
Sbjct: 31  ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90

Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
           TN +C    +     +T  +S ++A +
Sbjct: 91  TNTKCYSATRATVATNTKCYSATRATV 117


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQCIRFL 361
           AT  T  +    T  TV    K     CAT  T    +S     ATC  +ATN +C    
Sbjct: 316 ATMATSTKCYSVTCPTVATNTKGYSVMCATVATNTKCYS-----ATCATVATNTKCYSAT 370

Query: 362 KNGFCCHTTKWSLSKANL 415
           +     +T  +S + A +
Sbjct: 371 RATVATNTKCYSATCATM 388


>SB_17039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 475 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTVR 654
           +E ++  +  +YD+   +HE G   V  S  +   V H   D  ++ Y+   I   ST +
Sbjct: 54  DEFVKTIEVDLYDTEGNIHESGSKEVSLSCKTNPAVVHIRHDMTMKFYYSRKIRVSSTRK 113

Query: 655 EERSD 669
            E  D
Sbjct: 114 RENDD 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,245,263
Number of Sequences: 59808
Number of extensions: 533607
Number of successful extensions: 1408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)