Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g09
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0053 + 11721658-11721689,11721960-11722710                       28   2.4  
03_06_0635 + 35210755-35210855,35210938-35211088,35211171-352113...    27   5.6  

>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 245 VDLENASVINLIDAVMTARI-LDLGVCCNYYRRDRAV 352
           +D  N    + ID  +T RI +D  VC +Y+R DR +
Sbjct: 78  LDDANIPSTSAIDTTITDRIFMDFSVCPSYFRSDRTL 114


>03_06_0635 +
           35210755-35210855,35210938-35211088,35211171-35211341,
           35211864-35212043,35213174-35213303,35213580-35213749
          Length = 300

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 321 QTPKSRIRAVMTASMRL--ITLAFSRSTSRHISKARGFIPLLILSTRSEVVNKKK*ITQN 148
           ++P+ ++  +M+    +  + L  S S  R +S A  F+P+LI  T  E V +    +  
Sbjct: 154 KSPREKLSCIMSCCQVINNLLLNVSMSNDRTLSGADDFLPILIYITIKESVFQTHMESAR 213

Query: 147 WPNYIS 130
             N+IS
Sbjct: 214 LGNHIS 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,356
Number of Sequences: 37544
Number of extensions: 138244
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)