Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g08
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    25   0.27 
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    25   0.27 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.6  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 95  TQRWKVLCSNPHCTLSRGCAFWTMKETEFWPN-ITIKTSYPQLRSRRHL 238
           T+RW+ L  +    L +    WT +    W N +T +   P++ S R L
Sbjct: 18  TERWQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFL 66


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 95  TQRWKVLCSNPHCTLSRGCAFWTMKETEFWPN-ITIKTSYPQLRSRRHL 238
           T+RW+ L  +    L +    WT +    W N +T +   P++ S R L
Sbjct: 18  TERWQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFL 66


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 124 VRTENLPSLCEPLCGLIIFHCIIIL 50
           +R  + PSL E L G   F C+ +L
Sbjct: 27  LRLHDNPSLREGLKGARTFRCVFVL 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,707
Number of Sequences: 336
Number of extensions: 2587
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)