Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19g08
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 101 4e-22
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 97 5e-21
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 91 6e-19
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 30 0.85
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 29 2.6
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 27 6.0
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303... 27 7.9
09_01_0154 + 2298432-2299415 27 7.9
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 101 bits (241), Expect = 4e-22
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Frame = +1
Query: 139 VKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 306
VK + +LD EG R+ YY D PT + AFEK++F KT +A A EI+M DG
Sbjct: 7 VKNILLLDSEGKRVAVKYYTDD-WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIV 65
Query: 307 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 474
VYK DL F+V G ENELIL SVL ++V ++LR N+++R +ENLD ++L
Sbjct: 66 VYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILL 121
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 97.5 bits (232), Expect = 5e-21
Identities = 52/116 (44%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Frame = +1
Query: 139 VKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKTH----RANAEIIMLDGLTC 306
VK + +LD EG R+ YY D P+ ++AFEK++F KT R AEI+M D
Sbjct: 151 VKNILVLDSEGKRVAVKYYSDD-WPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFV 209
Query: 307 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 474
VYK DL F+V G ENELIL SVL E++ LLR + RR +ENLD + L
Sbjct: 210 VYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFL 265
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Frame = +1
Query: 139 VKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 306
VK + +LD EG R+ Y+ D + + AFEK++F KT + NA EI + DG
Sbjct: 27 VKNILLLDSEGKRVAVKYFSDD-WSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIV 85
Query: 307 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 474
VYK DL F+V ENELI+ +VL +SV LLLR ++E+R +ENLD ++L
Sbjct: 86 VYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 141
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 286 MLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLN-ALYESVSLLLRRNMER 438
+LD C++ N+ F+V +S E +L+ ++N LY+ L R +E+
Sbjct: 108 LLDSFLCMW-FNIHTLFFVQLTSSETRKVLEHIINYVLYKMFQSLARERLEQ 158
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 480 EGKHNSIQVLHKDSPLHVPSKQQTNRLVERIQY*LKD 370
EG N + +LH+ + LH+ RLVE+I+Y LKD
Sbjct: 454 EGYRNLLLMLHEKTNLHIQC-----RLVEQIRYLLKD 485
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 139 VKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKT-HRANAEIIMLD--GLTCV 309
++ + +++ +G +A YY+ + E++A E + K R + + ++ V
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEH---LSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVV 59
Query: 310 YKSNVDLFFYVMGSSHENELILQSVLNALYESV 408
Y+ LFF V + ENEL + ++ L E++
Sbjct: 60 YRRYASLFFLVGVDNDENELAILEFIHLLVETM 92
>10_08_0427 +
17828007-17828570,17829788-17829904,17830319-17830384,
17831466-17831572,17831939-17832017,17832861-17833574,
17834040-17834148,17834263-17834429,17834876-17834950,
17835025-17835117,17835202-17835294
Length = 727
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 WVNNFSLYYYFKELKIP 33
W +NF L+ +F+ LK+P
Sbjct: 710 WTSNFHLFEFFRRLKLP 726
>09_01_0154 + 2298432-2299415
Length = 327
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 401 SLLVCCLEGTWSGESLWRTWMLL 469
S+ V EG W+ +LW W L+
Sbjct: 210 SIAVSSAEGRWAAPALWLAWRLM 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,665
Number of Sequences: 37544
Number of extensions: 239463
Number of successful extensions: 483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -