Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g08
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.1  
SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 125  PHCTLSRGCAFWTMKETEFWPNITIKTSYPQLRSRRHL 238
            P C  + G    T+K+++F+ +  + +SY    +R HL
Sbjct: 950  PECLKAIGAQSGTLKDSQFFASSELSSSYRASNARLHL 987


>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 163 YEGNRILAXYYDKDVLPTTKE--QKAFEKNLFNKTHRANAEIIMLDGLTCVYKSNVDLFF 336
           +E N      + K+ +   KE  QK+ EKN  ++ HRA  E+I L          +DL  
Sbjct: 369 FEANGHGTVLFSKEAVAKIKEVAQKS-EKN--SEQHRAATELIYL----------IDLVN 415

Query: 337 YVMGSSHENELILQSVLNA 393
             +G S  + L+++S+LNA
Sbjct: 416 QAVGDSISDMLVVESILNA 434


>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  LTHTMVHTTMEGSLFEPTLYIVKGMCI-LDYEGNRILAXYYDKDVLPTTKEQKAFEKNLF 252
           +T   +H  M    F PT   ++ M   +DY+GN +L      D++   K+    E++L 
Sbjct: 165 VTTKELHKAMRTLGFNPTEEEIQEMVNEVDYDGNGVLDFNEFVDLMENQKKPDEEEQDLI 224

Query: 253 NKTH 264
           N  H
Sbjct: 225 NAFH 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,813
Number of Sequences: 59808
Number of extensions: 300700
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)